Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 7.9e-191 670.2 327 100.0
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.3e-163 577.8 308 92.9
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 3.2e-144 515.4 317 81.4
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.3e-142 509.2 309 81.9
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.1e-139 500.4 309 80.3
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 4.5e-138 495.0 314 79.3
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 8.5e-137 490.7 309 79.0
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 9.9e-77 291.2 314 50.0
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 9.3e-75 284.6 357 47.1
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 3.5e-74 282.7 325 50.5
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 3.9e-73 279.3 344 47.4
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 3.4e-69 266.2 361 43.2
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 7.6e-69 265.0 308 47.7
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.3e-68 264.2 321 48.3
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 6.5e-68 261.9 316 45.3
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 4.6e-66 255.8 322 44.4
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.5e-64 250.8 353 42.2
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 2.5e-64 250.0 303 47.9
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 3.3e-64 249.6 313 46.0
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 7.4e-64 248.4 318 45.6
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 7.4e-64 248.4 342 42.4
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 3.7e-63 246.1 314 45.9
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 4.8e-63 245.7 314 45.9
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 6.2e-63 245.4 314 46.2
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.4e-62 243.4 328 44.5
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 5.3e-62 242.3 310 45.8
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 9.0e-62 241.5 353 40.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.2e-61 241.1 315 44.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.4e-61 239.6 329 45.0
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 4.5e-61 239.2 320 44.1
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 5.8e-61 238.8 326 43.9
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 7.6e-61 238.4 322 42.9
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 7.6e-61 238.4 326 42.0
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.2e-60 236.9 323 43.0
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.9e-59 233.8 309 45.0
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.9e-59 233.8 332 41.9
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 4.2e-59 232.6 319 42.6
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 1.2e-58 231.1 322 42.9
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.6e-58 230.7 329 41.3
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 2.7e-58 229.9 349 39.3
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 2.7e-58 229.9 324 41.0
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 3.5e-58 229.6 320 44.7
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 6.1e-58 228.8 331 41.7
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 1.8e-57 227.3 331 41.4
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.3e-57 226.9 317 42.9
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 3.9e-57 226.1 313 42.8
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 5.1e-57 225.7 329 40.7
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 1.3e-55 221.1 314 40.1
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 3.7e-55 219.5 330 42.7
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 4.8e-55 219.2 324 42.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 6.3e-55 218.8 312 43.9
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 1.1e-54 218.0 323 41.2
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 3.1e-54 216.5 310 41.6
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 4.1e-54 216.1 324 41.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 4.1e-54 216.1 329 41.6
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 4.1e-54 216.1 324 42.3
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 4.1e-54 216.1 324 42.3
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 5.3e-54 215.7 322 40.7
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 5.9e-53 212.2 319 41.7
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 7.7e-53 211.8 304 44.1
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 2.2e-52 210.3 297 42.1
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 2.2e-52 210.3 323 42.4
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 6.5e-52 208.8 326 39.6
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 8.5e-52 208.4 332 41.3
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 2.5e-51 206.8 343 38.8
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 5.5e-51 205.7 340 37.6
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 2.1e-50 203.8 328 38.1
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 1.4e-49 201.1 327 43.4
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 3.9e-49 199.5 315 41.9
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 5.1e-49 199.1 312 41.3
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 8.8e-49 198.4 330 42.1
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 6.3e-47 192.2 311 39.5
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 6.9e-46 188.7 284 41.9
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.5e-45 187.6 161 55.9
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.5e-45 187.6 304 38.5
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.0e-44 184.9 326 38.7
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 1.0e-44 184.9 324 39.2
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 6.5e-44 182.2 331 37.2
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 4.7e-42 176.0 330 38.2
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 1.8e-41 174.1 318 38.1
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.1e-41 172.6 337 37.1
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 5.1e-41 172.6 292 35.6
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 8.8e-41 171.8 425 31.5
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.1e-40 171.4 333 37.2
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.1e-40 171.4 324 38.0
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.5e-40 171.0 153 56.2
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 9.7e-40 168.3 315 34.9
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 3.1e-38 163.3 308 37.3
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 4.1e-38 162.9 246 42.3
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 7.0e-38 162.2 326 37.7
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.2e-37 161.4 149 57.0
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.9e-37 159.1 326 37.7
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 2.2e-36 157.1 330 36.7
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.5e-35 153.7 137 56.9
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 5.5e-35 152.5 157 50.3
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 7.2e-35 152.1 150 53.3
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.1e-34 150.6 150 52.7
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 6.1e-34 149.1 157 51.0
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.6e-32 143.7 199 44.7
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.7e-31 141.0 233 39.9
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.6e-29 133.7 291 34.4
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.3e-28 131.3 142 47.2
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.3e-28 131.3 151 47.7
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.7e-28 131.0 344 29.7
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.2e-26 124.8 123 50.4
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.7e-26 123.6 111 51.4
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.7e-26 123.6 105 54.3
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 3.6e-26 123.2 345 29.3
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.6e-24 117.1 138 50.0
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 2.2e-23 114.0 142 41.5
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.7e-20 104.4 146 42.5
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 3.8e-20 103.2 143 44.1
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 3.8e-20 103.2 131 46.6
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.7e-18 97.1 135 40.0
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 4.7e-18 96.3 148 39.9
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 1.8e-17 94.4 144 40.3
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.0e-17 93.6 152 39.5
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.7e-15 86.7 184 33.2
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 7.0e-14 82.4 163 35.0
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.3e-12 77.4 101 40.6
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.3e-12 77.4 101 40.6
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 6.1e-10 69.3 122 33.6
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 8.9e-09 65.5 117 38.5
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.8e-06 57.8 56 44.6
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 9.2e-06 55.5 57 43.9
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 9.2e-06 55.5 64 42.2


User provided reference genes

Program Settings