Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.8e-258 894.8 464 100.0
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.2e-208 729.9 517 77.9
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.0e-196 690.3 578 67.1
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 3.0e-196 688.7 578 67.1
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 4.0e-196 688.3 578 67.0
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.5e-147 526.9 514 60.7
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 5.4e-145 518.5 460 63.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.3e-135 487.3 575 51.1
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 5.1e-135 485.3 564 48.9
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 8.1e-133 478.0 562 50.2
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.3e-127 459.9 578 48.6
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.5e-126 456.4 584 48.3
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 9.0e-124 448.0 577 47.3
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.2e-123 447.6 567 48.0
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.3e-122 444.1 570 47.5
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.2e-120 437.6 577 46.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.2e-120 437.6 608 45.1
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.6e-120 435.6 555 49.2
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.4e-113 414.1 561 46.3
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 5.7e-110 402.1 566 44.9
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 5.7e-110 402.1 551 44.6
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 3.7e-109 399.4 564 43.6
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 7.7e-107 391.7 523 46.8
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 9.4e-105 384.8 550 44.4
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.6e-104 384.0 553 42.9
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 8.8e-103 378.3 549 43.7
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 4.3e-102 375.9 558 45.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 9.7e-102 374.8 547 45.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.3e-101 374.4 568 43.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.4e-100 370.9 556 43.9
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.4e-100 370.2 548 42.3
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.1e-100 369.8 560 42.1
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 2.0e-99 367.1 560 41.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.0e-99 367.1 551 44.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.6e-99 366.7 698 37.2
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 5.9e-99 365.5 555 42.5
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 7.7e-99 365.2 557 41.7
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 7.7e-99 365.2 559 42.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 6.5e-98 362.1 570 41.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.9e-97 360.5 557 42.2
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.6e-96 357.5 559 41.1
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.8e-95 354.0 566 42.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 5.1e-95 352.4 563 41.2
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.1e-94 351.3 557 41.5
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.5e-94 350.9 558 41.4
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.0e-94 350.5 552 40.9
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.4e-94 349.4 561 41.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.3e-93 347.8 561 42.2
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.2e-93 347.1 562 40.6
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.7e-93 346.3 559 40.6
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 6.3e-93 345.5 560 40.5
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.8e-92 344.0 560 40.5
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.4e-92 343.6 559 40.8
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 9.1e-92 341.7 531 40.9
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 5.9e-91 339.0 573 39.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.3e-90 337.8 559 40.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.5e-89 333.6 579 39.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.6e-88 329.7 558 39.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 6.1e-88 328.9 530 39.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 6.1e-88 328.9 559 40.1
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.6e-86 323.6 549 40.3
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 5.7e-86 322.4 552 39.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 2.2e-82 310.5 548 39.4
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.8e-82 309.7 550 38.2
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.0e-82 309.3 556 39.0
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 5.0e-82 309.3 544 38.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.1e-81 308.1 559 38.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 2.1e-80 303.9 482 40.0
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.7e-80 303.5 549 39.5
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.4e-79 301.2 549 39.3
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 6.8e-79 298.9 549 38.4
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 6.8e-79 298.9 547 38.4
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 7.5e-78 295.4 548 39.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 9.8e-78 295.0 546 37.9
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 2.8e-77 293.5 546 37.7
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 8.3e-77 292.0 547 37.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.1e-76 289.7 537 38.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 9.1e-76 288.5 546 37.4
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 2.7e-75 287.0 536 37.9
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.5e-75 286.6 537 38.7
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 3.5e-75 286.6 541 37.2
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.0e-74 285.0 537 38.0
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.3e-74 284.6 537 38.0
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.7e-74 284.3 542 37.3
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.2e-74 283.9 536 37.5
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.5e-73 280.4 505 38.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 4.2e-73 279.6 549 38.4
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 6.1e-72 275.8 506 37.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.6e-70 270.4 545 35.6
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.8e-66 256.5 401 40.1
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.8e-66 256.5 269 55.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 5.6e-65 252.7 536 35.3
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.8e-63 247.7 298 48.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.7e-61 241.1 498 35.9
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.2e-59 235.0 488 34.8
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.6e-59 234.6 159 74.2
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.6e-59 234.6 349 40.4
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.0e-58 230.3 236 53.0
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 6.6e-58 229.2 279 49.1
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 7.0e-52 209.1 152 67.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.6e-48 198.0 554 31.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 3.6e-48 196.8 561 30.5
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.7e-48 196.4 158 62.7
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.4e-47 194.9 158 62.0
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.4e-44 184.9 395 33.7
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 5.1e-42 176.4 190 54.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.7e-40 169.9 264 42.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.7e-40 169.9 120 74.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 1.1e-39 168.7 217 46.1
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.9e-36 157.9 157 54.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 7.1e-36 156.0 160 50.6
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 3.0e-34 150.6 120 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.9e-33 147.9 529 28.2
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.3e-33 147.1 582 27.8
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.4e-31 141.7 268 36.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 6.9e-31 139.4 139 57.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.6e-30 136.0 195 42.6
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.3e-29 135.2 195 43.1
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.7e-29 134.8 195 42.6
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 6.4e-29 132.9 395 29.1
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 8.4e-29 132.5 217 41.5
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 4.2e-28 130.2 444 28.6
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.1e-25 122.1 291 33.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.8e-22 109.8 82 61.0
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.3e-21 108.6 102 47.1
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.4e-20 104.4 243 38.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 7.1e-20 102.8 102 58.8
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 7.9e-19 99.4 421 24.9
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 2.6e-14 84.3 181 35.9
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.2e-12 77.0 94 48.9
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.2e-12 77.0 94 48.9
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 7.1e-12 76.3 96 49.0
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.0e-10 72.4 66 54.5
CAN.G1235.8 Capsicum annuum HOM05D002513 ORTHO05D002720 5.6e-09 66.6 36 83.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.6e-08 65.1 74 47.3


User provided reference genes

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