Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.2e-214 749.6 370 100.0
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 9.5e-201 703.4 389 91.5
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.7e-178 629.4 428 77.6
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.6e-176 621.7 428 76.9
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.8e-175 619.4 429 76.0
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.1e-164 583.6 386 77.7
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 3.9e-162 575.1 390 77.9
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 3.1e-151 538.9 348 79.6
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.5e-147 525.4 385 69.1
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 3.0e-146 522.3 429 64.6
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 3.9e-146 521.9 377 68.4
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 6.7e-146 521.2 434 63.4
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.9e-145 519.6 374 67.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 3.3e-145 518.8 383 67.4
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 4.3e-145 518.5 388 66.5
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 7.4e-145 517.7 390 66.2
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 3.7e-144 515.4 384 66.7
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 3.7e-144 515.4 379 67.3
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.1e-143 513.8 375 69.6
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.1e-143 513.8 384 68.2
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.1e-143 512.3 380 66.1
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 5.3e-143 511.5 370 67.6
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 2.6e-142 509.2 395 64.1
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.0e-141 507.3 377 67.1
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 1.3e-141 506.9 417 63.1
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.2e-141 506.1 378 65.9
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 2.2e-141 506.1 383 65.8
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 5.0e-141 505.0 440 60.2
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.0e-141 505.0 394 64.2
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 8.4e-141 504.2 413 63.0
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.4e-140 503.4 424 60.1
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.9e-140 503.1 400 62.2
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.5e-140 502.7 387 64.6
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 3.5e-139 498.8 376 65.4
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.0e-138 495.7 383 66.6
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 5.1e-138 495.0 430 60.7
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 6.7e-138 494.6 374 66.0
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 8.7e-138 494.2 372 65.3
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.5e-137 493.4 387 63.8
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.9e-137 493.0 392 64.0
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 2.5e-137 492.7 418 61.5
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 3.3e-137 492.3 374 64.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 3.3e-137 492.3 430 59.5
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.3e-137 491.9 374 65.2
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 4.3e-137 491.9 378 64.0
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 5.7e-137 491.5 418 62.0
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 7.4e-137 491.1 430 60.0
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 9.7e-137 490.7 356 67.7
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.6e-136 490.0 386 65.0
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.2e-136 489.6 383 64.8
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 6.3e-136 488.0 372 66.9
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 4.1e-135 485.3 442 57.5
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 5.3e-135 485.0 480 56.0
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 5.3e-135 485.0 374 65.0
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.9e-135 484.6 393 62.3
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 6.9e-135 484.6 398 61.8
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 6.9e-135 484.6 372 64.8
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.4e-134 482.3 398 62.3
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 3.4e-134 482.3 374 64.7
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 4.5e-134 481.9 376 63.3
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 6.5e-133 478.0 373 64.1
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 1.1e-132 477.2 376 63.0
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 1.4e-132 476.9 372 63.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.4e-132 476.9 407 61.7
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.5e-132 476.1 386 62.7
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 3.2e-132 475.7 402 60.4
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 7.2e-132 474.6 376 62.5
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 9.4e-132 474.2 392 61.2
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 2.1e-131 473.0 376 62.5
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 6.1e-131 471.5 372 62.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 7.9e-131 471.1 386 61.9
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 5.1e-130 468.4 420 57.6
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 5.1e-130 468.4 349 70.5
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 8.8e-130 467.6 401 59.4
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 8.8e-130 467.6 401 59.4
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 7.4e-129 464.5 373 63.8
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.2e-128 463.0 384 63.0
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.4e-127 459.5 376 60.9
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.1e-127 459.1 408 57.8
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 5.3e-127 458.4 340 67.1
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 1.5e-126 456.8 378 61.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.0e-126 456.4 378 62.2
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.4e-126 455.7 357 63.3
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 3.4e-126 455.7 374 61.8
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.3e-125 453.8 378 61.1
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.5e-124 449.5 396 58.8
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 9.4e-124 447.6 385 61.6
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.1e-123 446.4 386 61.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 3.6e-123 445.7 382 59.9
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 4.7e-123 445.3 376 60.4
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 7.9e-123 444.5 376 60.1
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.3e-122 443.0 340 65.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.5e-121 440.3 339 63.4
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.0e-121 439.9 376 59.3
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 4.4e-121 438.7 378 59.0
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.3e-120 437.2 381 58.8
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.7e-120 436.8 381 58.8
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.5e-118 430.3 395 57.2
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 7.7e-118 427.9 284 76.8
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 7.2e-116 421.4 356 61.5
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 7.0e-111 404.8 316 65.8
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.5e-108 397.1 368 54.9
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.5e-108 396.4 316 63.3
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 4.2e-108 395.6 316 63.9
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 5.5e-108 395.2 356 55.1
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 9.4e-108 394.4 416 51.9
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 4.0e-106 389.0 633 39.2
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 4.0e-106 389.0 354 54.8
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 6.8e-106 388.3 319 63.3
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.8e-103 380.2 346 56.4
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 1.0e-98 364.4 286 63.3
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.2e-97 360.9 292 63.7
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-91 340.9 291 62.5
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 2.1e-91 340.1 232 71.6
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.3e-84 316.2 398 45.2
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.3e-84 316.2 390 45.4
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.1e-83 313.5 344 45.6
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 8.0e-83 311.6 554 37.4
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 6.4e-80 302.0 179 83.8
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 6.0e-78 295.4 221 68.3
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-63 248.1 133 86.5
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 6.0e-62 242.3 163 73.6
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 3.0e-61 240.0 150 75.3
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 4.0e-58 229.6 204 57.4
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 3.6e-43 179.9 159 59.1
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 4.8e-43 179.5 158 58.9
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.4e-42 177.2 158 58.2
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 5.6e-36 156.0 312 35.9
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 4.6e-30 136.3 94 61.7
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 2.1e-27 127.5 75 72.0
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 1.1e-26 125.2 69 89.9
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 4.5e-25 119.8 76 71.1
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 1.1e-23 115.2 334 27.8
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.5e-23 114.0 215 38.6
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.2e-22 111.7 155 47.1
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 4.8e-19 99.8 121 48.8
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 4.8e-19 99.8 121 48.8
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.8e-18 97.8 120 47.5
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.7e-16 91.3 331 27.2
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.9e-13 80.1 46 71.7
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.5e-12 78.2 194 33.5
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 9.7e-12 75.5 303 26.1
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.7e-11 73.6 292 24.3
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-09 68.6 327 25.4
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 2.2e-08 64.3 74 43.2
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.5e-07 60.8 65 47.7
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.2e-06 58.5 326 21.2
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.2e-06 58.5 328 24.4
FvH4_5g18020 Fragaria vesca HOM05D005071 ORTHO05D006069 4.7e-06 56.6 28 82.1
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 4.7e-06 56.6 284 25.0
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.9e-06 55.8 171 32.7


User provided reference genes

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