Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-200 703.0 349 100.0
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.9e-177 624.0 389 83.5
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.2e-151 539.3 389 72.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.6e-144 516.5 389 70.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 5.9e-120 434.9 486 54.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.6e-112 408.7 422 55.5
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 7.8e-112 407.9 422 55.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 3.9e-111 405.6 422 55.2
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.0e-103 378.6 424 52.4
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 7.1e-97 358.2 390 52.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 3.5e-96 355.9 391 54.0
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 6.0e-96 355.1 392 53.3
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.9e-94 350.1 386 51.3
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.5e-94 349.7 308 58.4
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 5.6e-94 348.6 262 65.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 5.6e-94 348.6 390 52.1
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 2.1e-93 346.7 386 51.3
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.8e-93 346.3 386 50.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.7e-93 345.5 294 59.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.1e-93 344.7 297 61.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.4e-92 344.0 398 51.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 6.8e-92 341.7 386 52.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 6.8e-92 341.7 389 51.7
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 8.9e-92 341.3 388 50.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.6e-91 339.7 386 49.7
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.4e-91 339.0 258 63.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 5.8e-91 338.6 386 49.7
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.8e-91 338.6 386 49.7
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.8e-91 338.6 283 62.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.7e-90 337.0 258 65.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.9e-90 336.3 387 49.1
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 6.4e-90 335.1 386 49.5
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.4e-89 334.0 258 63.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 3.2e-89 332.8 387 51.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.1e-89 332.4 389 51.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 4.1e-89 332.4 386 50.0
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 5.4e-89 332.0 260 64.6
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 7.1e-89 331.6 386 49.2
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 9.2e-89 331.3 388 50.3
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.1e-88 330.1 257 64.6
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-88 329.7 387 50.4
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.7e-88 329.7 254 63.0
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.0e-88 328.6 257 64.2
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.3e-87 326.6 389 50.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 6.6e-87 325.1 254 64.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 8.6e-87 324.7 260 60.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.6e-87 324.7 257 63.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 8.6e-87 324.7 386 47.2
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.5e-86 323.9 386 47.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.3e-86 322.8 382 50.0
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.3e-86 322.8 257 63.4
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 7.3e-86 321.6 386 48.4
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 7.3e-86 321.6 386 47.9
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 9.6e-86 321.2 386 47.4
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 6.2e-85 318.5 312 54.2
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.8e-84 317.0 382 47.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 3.1e-84 316.2 386 49.2
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.9e-84 315.1 375 51.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.9e-84 315.1 386 49.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 9.0e-84 314.7 308 54.2
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 4.4e-83 312.4 386 47.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.4e-83 312.4 256 60.5
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.3e-82 310.8 385 47.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.9e-82 308.9 257 60.7
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.9e-82 308.9 254 62.2
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.4e-81 307.4 384 48.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.9e-81 307.0 387 47.5
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 3.2e-81 306.2 387 47.0
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 4.2e-81 305.8 386 46.4
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.4e-81 305.4 311 52.4
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 9.3e-81 304.7 385 47.3
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.2e-80 304.3 386 46.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-80 303.9 383 47.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.1e-80 303.5 247 63.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 3.5e-80 302.8 264 57.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-79 301.2 392 46.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.3e-79 300.8 385 48.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.7e-79 300.4 387 46.5
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.5e-78 296.6 384 45.1
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.3e-77 294.3 386 46.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.8e-77 292.4 263 54.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 6.2e-77 292.0 380 45.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.1e-76 289.7 409 44.0
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.0e-76 289.3 389 45.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.2e-75 287.7 398 43.0
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.4e-73 280.0 382 45.8
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.0e-71 273.1 387 42.4
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.1e-70 271.2 384 43.0
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.5e-70 270.0 382 43.7
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.3e-70 269.6 372 45.7
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.6e-69 267.3 387 41.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.2e-67 261.2 385 40.0
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-67 259.6 211 59.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.8e-67 258.8 208 59.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.8e-66 256.1 254 51.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.9e-66 255.8 342 45.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.9e-65 253.8 386 40.4
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.7e-64 250.0 336 42.9
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 4.6e-64 249.2 400 41.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.0e-64 248.8 386 39.1
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 3.9e-63 246.1 258 47.3
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 8.7e-63 245.0 144 80.6
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.7e-63 245.0 291 45.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.7e-63 245.0 359 44.8
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.4e-60 236.9 265 44.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.3e-60 235.7 260 45.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-59 234.6 265 44.2
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-58 231.1 386 37.0
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.3e-58 231.1 386 37.0
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 8.4e-58 228.4 265 44.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 8.4e-58 228.4 386 36.8
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.2e-56 224.6 388 36.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 3.0e-55 219.9 386 36.3
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 8.7e-55 218.4 386 36.0
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.3e-54 216.5 395 37.5
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.3e-50 204.5 260 41.9
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 3.6e-48 196.4 172 58.1
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.0e-42 178.3 176 48.3
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.2e-40 171.4 168 52.4
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 2.7e-40 170.2 160 53.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.4e-39 167.9 117 70.1
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.3e-39 167.2 123 66.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.6e-38 163.7 313 35.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.8e-37 160.2 352 33.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-36 157.9 121 63.6
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.2e-33 146.7 99 70.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.7e-29 134.4 101 69.3
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.5e-27 126.7 246 34.1
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.5e-26 122.5 99 59.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.4e-25 118.6 127 48.8
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.8e-23 114.4 67 73.1
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 5.2e-23 112.8 215 39.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.6e-19 101.3 57 73.7
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 5.2e-15 86.3 181 38.1
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.4e-14 83.2 183 38.3
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.2e-13 80.9 66 62.1
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-12 78.2 49 69.4
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 7.7e-11 72.4 76 52.6


User provided reference genes

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