Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.7e-308 1060.1 524 100.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.9e-296 1021.1 524 94.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 8.5e-272 939.9 525 85.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.1e-266 921.4 527 83.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 5.4e-266 920.6 527 83.3
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 5.9e-265 917.1 525 83.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.8e-258 895.6 531 81.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.7e-235 819.3 524 73.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-229 798.9 552 70.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-229 798.9 552 70.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.3e-224 783.1 523 71.3
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.8e-221 772.7 532 69.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.2e-218 761.9 526 70.2
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.0e-217 757.7 525 69.1
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.0e-217 757.7 525 69.1
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.0e-216 756.9 524 71.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.6e-216 754.2 525 69.5
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.6e-216 754.2 525 69.5
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-215 753.4 529 69.8
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-215 753.1 530 69.2
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-215 753.1 530 69.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.1e-214 749.2 524 69.3
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.1e-214 747.3 536 68.7
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.0e-213 745.0 534 68.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.9e-211 738.8 526 68.1
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 8.7e-208 727.2 526 66.9
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 6.2e-206 721.1 529 66.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 6.2e-206 721.1 529 67.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.0e-205 718.4 526 65.4
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.2e-204 716.8 525 65.1
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-204 715.7 530 67.4
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.5e-204 714.9 532 67.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 5.8e-204 714.5 528 66.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.8e-204 714.5 529 67.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.6e-204 714.1 532 66.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 9.9e-204 713.8 529 66.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.2e-203 712.6 524 64.5
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.9e-203 712.2 527 66.8
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 8.4e-203 710.7 531 66.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.2e-202 708.4 530 66.6
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 9.3e-202 707.2 520 66.7
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-201 706.8 520 66.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-201 706.4 542 65.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 7.9e-201 704.1 537 64.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.7e-200 701.0 520 65.8
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.3e-199 698.4 520 65.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.1e-198 696.0 527 67.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.4e-197 692.6 525 65.7
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 5.3e-197 691.4 505 66.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.5e-196 689.9 505 66.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.5e-196 689.9 537 62.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.6e-196 689.1 520 64.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.2e-195 686.0 525 63.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.4e-194 683.3 525 64.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.2e-194 681.8 528 63.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 2.1e-193 679.5 530 64.2
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.5e-193 678.7 530 63.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.0e-192 677.2 518 64.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.3e-192 676.0 529 62.8
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.3e-192 676.0 534 62.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 3.0e-192 675.6 524 62.8
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.7e-192 674.1 536 61.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-191 671.8 531 64.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 5.7e-191 671.4 535 61.3
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.1e-190 669.5 524 62.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.4e-189 666.8 526 62.7
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.3e-189 664.8 531 62.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-188 663.7 523 62.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.5e-188 663.3 531 62.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-188 662.5 531 62.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.3e-187 660.2 534 62.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.3e-187 660.2 528 61.9
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.9e-187 659.1 557 59.6
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.8e-187 658.7 551 59.9
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 8.5e-187 657.5 546 59.3
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-186 657.1 547 59.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-186 657.1 546 59.7
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.4e-186 656.8 560 59.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.4e-186 656.8 530 62.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.5e-186 656.0 550 58.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.2e-186 655.6 555 59.6
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.5e-186 654.8 519 61.8
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 9.3e-186 654.1 529 61.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 6.1e-185 651.4 556 59.7
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 7.9e-185 651.0 536 60.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.8e-184 649.8 550 59.1
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.9e-184 648.7 535 60.9
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.1e-183 647.1 517 61.9
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.9e-183 646.4 541 59.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.3e-183 645.6 531 59.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.8e-181 639.8 527 59.2
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 6.9e-181 637.9 519 61.5
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.4e-180 635.6 504 61.5
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.2e-177 627.1 526 58.7
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.4e-176 623.6 540 57.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.8e-176 623.2 528 60.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.4e-175 618.6 543 57.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 5.7e-175 618.2 537 57.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 5.3e-173 611.7 463 62.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 5.3e-173 611.7 524 58.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.2e-172 610.5 404 69.3
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.0e-171 607.4 472 61.4
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.9e-170 603.2 535 56.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.4e-170 600.9 470 58.9
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-169 600.1 521 56.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.1e-169 599.7 489 62.4
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.3e-167 592.4 463 62.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.3e-165 585.1 446 65.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.7e-161 572.0 393 68.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-159 567.4 450 60.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.8e-152 543.5 311 80.4
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.3e-150 537.3 382 65.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.1e-149 532.3 311 79.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 5.4e-149 531.9 450 57.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-147 526.9 424 61.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-141 507.3 303 77.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.5e-140 502.7 291 78.7
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.6e-137 493.8 311 71.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.4e-127 459.1 483 45.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.1e-121 440.3 382 56.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-120 438.0 288 68.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-118 429.5 241 83.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 7.3e-114 415.2 519 40.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.5e-111 407.5 529 41.6
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.2e-109 399.8 238 79.0
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.7e-107 394.0 246 75.6
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 4.2e-93 346.3 487 43.5
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 8.1e-89 332.0 198 77.8
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 2.2e-86 323.9 201 74.1
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.1e-84 317.4 339 51.0
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.1e-83 312.8 330 49.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-77 294.7 221 62.4
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-72 278.1 270 53.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.9e-67 260.0 166 73.5
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-55 221.1 200 55.5
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.4e-55 220.3 200 55.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 5.2e-51 206.5 157 65.6
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.8e-51 205.7 129 68.2
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.8e-51 205.7 129 68.2
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-50 205.3 124 71.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-49 201.8 401 30.4
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.5e-47 193.7 228 44.7
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 8.5e-46 189.1 190 48.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-44 184.9 109 80.7
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 4.7e-44 183.3 159 56.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.0e-39 167.9 106 67.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.7e-36 157.5 166 50.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.0e-35 155.6 170 45.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-35 155.2 278 37.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.0e-35 154.1 300 33.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.4e-34 150.2 156 50.0
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.4e-32 144.4 95 73.7
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-30 137.5 279 34.4
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.5e-29 135.2 187 40.1
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.1e-28 129.8 76 72.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.1e-28 129.8 76 72.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.3e-27 127.9 95 65.3
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 6.8e-27 126.3 85 64.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.3e-21 107.5 109 49.5
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 8.9e-19 99.4 72 68.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-17 94.4 59 67.8
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 8.3e-17 92.8 88 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.1e-11 75.9 166 30.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.4e-08 63.5 34 91.2


User provided reference genes

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