Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 5.3e-201 704.1 356 100.0
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 9.2e-177 623.6 356 89.9
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 4.1e-76 289.3 208 73.1
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.1e-51 207.2 367 38.1
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.2e-46 191.4 387 37.2
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.6e-43 181.0 368 34.8
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.5e-41 173.7 383 33.7
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.3e-41 172.9 366 35.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.8e-37 159.8 244 40.6
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 4.9e-37 159.5 343 36.2
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 6.6e-34 149.1 389 32.4
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.3e-32 144.8 391 31.7
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 4.5e-30 136.3 383 31.3
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 3.8e-29 133.3 363 30.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.4e-28 131.3 368 33.4
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 7.9e-27 125.6 337 33.5
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.9e-26 123.2 399 30.1
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 6.7e-26 122.5 371 29.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.5e-25 120.6 369 30.1
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.1e-24 117.5 109 53.2
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.1e-24 117.5 377 30.0
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.6e-24 116.7 367 28.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 4.0e-23 113.2 86 58.1
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.5e-22 111.3 386 28.0
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 2.0e-22 110.9 330 29.1
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.5e-22 109.8 87 58.6
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 5.8e-22 109.4 127 42.5
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 9.9e-22 108.6 86 55.8
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 1.3e-21 108.2 344 31.4
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.7e-21 107.8 86 55.8
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.2e-21 107.5 256 34.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.2e-21 107.5 359 29.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-21 107.5 266 35.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 3.8e-21 106.7 381 28.1
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.8e-21 106.7 80 57.5
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 4.9e-21 106.3 84 54.8
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.4e-21 105.9 245 33.9
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.1e-20 105.1 330 27.6
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.9e-20 104.4 282 31.9
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.2e-20 103.6 329 27.4
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 5.5e-20 102.8 383 27.7
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 7.1e-20 102.4 179 39.1
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 9.3e-20 102.1 316 27.8
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 1.6e-19 101.3 399 28.8
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 3.5e-19 100.1 376 28.7
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 7.9e-19 99.0 325 27.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.0e-18 98.6 374 27.3
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 3.0e-18 97.1 334 29.0
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 5.1e-18 96.3 84 48.8
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 6.7e-18 95.9 84 48.8
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 6.7e-18 95.9 75 57.3
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 6.7e-18 95.9 334 29.9
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 1.9e-17 94.4 138 40.6
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 7.4e-17 92.4 280 31.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 9.6e-17 92.0 86 48.8
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.6e-17 92.0 81 50.6
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-16 91.3 86 48.8
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-16 91.3 72 54.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.1e-15 88.6 153 35.9
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 1.1e-15 88.6 118 39.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.2e-14 85.1 83 48.2
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.2e-14 85.1 131 32.8
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.2e-14 85.1 77 51.9
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 2.6e-14 84.0 130 37.7
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 3.4e-14 83.6 72 48.6
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 4.5e-14 83.2 78 44.9
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 4.5e-14 83.2 392 25.5
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 7.6e-14 82.4 74 48.6
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.3e-13 81.6 83 42.2
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 4.9e-13 79.7 154 33.8
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.9e-12 77.8 74 41.9
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.9e-12 77.8 107 37.4
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.2e-12 76.6 204 31.4
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 4.2e-12 76.6 85 38.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.2e-12 76.6 78 43.6
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 4.2e-12 76.6 83 43.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.5e-12 76.3 87 37.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 5.5e-12 76.3 87 36.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 9.3e-12 75.5 78 41.0
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 9.3e-12 75.5 87 40.2
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 9.3e-12 75.5 83 43.4
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 1.2e-11 75.1 72 45.8
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 1.2e-11 75.1 72 45.8
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.2e-11 75.1 87 39.1
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.6e-11 74.7 128 31.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.6e-11 74.7 84 39.3
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 2.1e-11 74.3 72 45.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.1e-11 74.3 98 35.7
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.7e-11 73.9 68 45.6
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.5e-11 73.6 69 44.9
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 3.5e-11 73.6 81 39.5
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 6.0e-11 72.8 81 38.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 6.0e-11 72.8 68 44.1
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.0e-11 72.8 122 33.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.0e-10 72.0 74 40.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.0e-10 72.0 80 41.2
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.3e-10 71.6 107 34.6
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.8e-10 71.2 80 45.0
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 2.3e-10 70.9 73 42.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 3.0e-10 70.5 128 27.3
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.0e-10 70.5 113 34.5
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.9e-10 70.1 75 40.0
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 5.1e-10 69.7 72 41.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.1e-10 69.7 69 43.5
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 6.7e-10 69.3 102 36.3
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 6.7e-10 69.3 68 45.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.7e-10 69.3 80 38.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.7e-10 69.3 101 33.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 6.7e-10 69.3 81 43.2
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 6.7e-10 69.3 74 44.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 6.7e-10 69.3 68 42.6
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 8.7e-10 68.9 85 32.9
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 8.7e-10 68.9 68 42.6
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.1e-09 68.6 75 38.7
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.5e-09 68.2 72 41.7
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.5e-09 68.2 81 38.3
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.5e-09 68.2 89 36.0
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 2.5e-09 67.4 68 45.6
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.5e-09 67.4 74 41.9
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 2.5e-09 67.4 49 57.1
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.3e-09 67.0 97 34.0
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.3e-09 67.0 92 34.8
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 3.3e-09 67.0 82 37.8
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.3e-09 66.6 68 44.1
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 4.3e-09 66.6 74 40.5
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 4.3e-09 66.6 68 39.7
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.3e-09 66.6 136 28.7
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-08 65.1 75 44.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-08 65.1 75 44.0
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.3e-08 65.1 75 44.0
AUR62036468 Chenopodium quinoa HOM05D038882 ORTHO05D003355 1.3e-08 65.1 315 30.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.3e-08 65.1 74 39.2
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.6e-08 64.7 145 31.7
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.6e-08 64.7 85 36.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.6e-08 64.7 80 38.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.8e-08 63.9 72 38.9
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 2.8e-08 63.9 54 51.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 2.8e-08 63.9 96 33.3
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.8e-08 63.9 72 40.3
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 3.7e-08 63.5 241 27.8
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 3.7e-08 63.5 80 42.5
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.7e-08 63.5 68 39.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.8e-08 63.2 69 40.6
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 4.8e-08 63.2 68 39.7
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.8e-08 63.2 74 37.8
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 6.3e-08 62.8 309 21.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 6.3e-08 62.8 74 39.2
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 8.2e-08 62.4 72 36.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 8.2e-08 62.4 146 32.2
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 8.2e-08 62.4 81 37.0
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.2e-08 62.4 72 38.9
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 8.2e-08 62.4 156 30.8
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.1e-07 62.0 72 38.9
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.1e-07 62.0 70 40.0
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.4e-07 61.6 72 36.1
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.4e-07 61.6 68 41.2
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.4e-07 61.6 68 41.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-07 61.6 151 26.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.8e-07 61.2 69 36.2
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.4e-07 60.8 151 25.2
DCAR_001919 Daucus carota HOM05D005863 ORTHO05D003355 2.4e-07 60.8 145 32.4
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.1e-07 60.5 103 33.0
Phvul.009G242100 Phaseolus vulgaris HOM05D005863 ORTHO05D003355 6.9e-07 59.3 266 25.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 9.0e-07 58.9 69 40.6
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.5e-06 58.2 68 33.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.0e-06 57.8 73 38.4
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.6e-06 57.4 73 38.4
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.6e-06 57.4 73 38.4
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.4e-06 57.0 73 39.7
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 3.4e-06 57.0 68 36.8
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 3.4e-06 57.0 73 38.4
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 3.4e-06 57.0 80 37.5
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.9e-06 56.2 68 38.2
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 7.6e-06 55.8 57 45.6
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.6e-06 55.8 85 31.8
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.6e-06 55.8 84 34.5
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.6e-06 55.8 84 34.5
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.0e-05 55.5 68 36.8
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.0e-05 55.5 90 32.2
Zm00001eb165220 Zea mays HOM05D005863 ORTHO05D003355 1.0e-05 55.5 81 34.6


User provided reference genes

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