Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 3.4e-200 701.4 348 100.0
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 6.1e-141 504.6 317 80.8
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 3.3e-139 498.8 315 79.7
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 4.4e-139 498.4 315 79.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 2.8e-138 495.7 315 79.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 4.0e-132 475.3 253 92.1
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 9.1e-129 464.2 308 74.7
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 5.9e-128 461.5 314 72.6
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 7.7e-128 461.1 320 72.8
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 2.9e-127 459.1 317 71.6
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 2.5e-126 456.1 307 72.6
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 5.5e-126 454.9 305 72.1
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 7.2e-126 454.5 318 71.7
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.6e-125 453.4 315 72.4
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.1e-125 453.0 320 70.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 2.7e-125 452.6 229 98.3
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 4.7e-125 451.8 313 70.6
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 6.1e-125 451.4 323 70.9
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.1e-125 451.4 320 69.4
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 8.0e-125 451.1 320 70.3
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.4e-124 450.3 318 71.7
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 3.0e-124 449.1 253 85.0
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 3.0e-124 449.1 323 70.3
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 4.0e-124 448.7 323 69.3
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 5.2e-124 448.4 309 72.8
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 6.8e-124 448.0 318 69.5
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 8.8e-124 447.6 343 67.9
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.5e-123 446.8 320 70.3
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.0e-123 446.4 253 84.2
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 4.4e-123 445.3 309 72.5
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 2.2e-122 443.0 247 86.6
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 2.2e-122 443.0 319 70.2
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.8e-122 442.6 313 70.6
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 4.8e-122 441.8 322 68.6
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 6.3e-122 441.4 318 68.9
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 2.4e-121 439.5 319 69.6
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.4e-121 439.5 310 70.6
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 3.1e-121 439.1 326 69.6
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 4.1e-121 438.7 318 68.9
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 5.4e-121 438.3 309 71.8
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 9.1e-121 437.6 316 68.7
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 9.1e-121 437.6 318 67.3
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.2e-120 437.2 308 69.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.2e-120 437.2 285 75.4
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.0e-120 436.4 314 70.7
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 3.5e-120 435.6 307 69.1
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 4.5e-120 435.3 253 83.4
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 4.5e-120 435.3 323 68.4
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 5.9e-120 434.9 310 69.0
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 7.7e-120 434.5 308 69.2
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.0e-119 434.1 253 82.2
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.2e-119 433.0 318 67.9
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.2e-119 433.0 318 67.9
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 3.8e-119 432.2 350 64.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 5.0e-119 431.8 301 70.1
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 6.5e-119 431.4 311 68.5
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 6.5e-119 431.4 253 80.6
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 6.5e-119 431.4 253 81.0
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.5e-118 430.3 308 68.5
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.9e-118 429.9 316 67.4
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 2.5e-118 429.5 319 66.5
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.2e-118 429.1 290 72.1
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.5e-118 428.3 319 66.5
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 9.4e-118 427.6 316 67.7
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.1e-117 426.4 253 81.0
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 4.7e-117 425.2 307 67.4
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 4.7e-117 425.2 253 79.4
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.0e-116 422.2 317 66.6
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 5.2e-116 421.8 316 67.4
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.2e-115 420.6 253 79.8
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 2.6e-115 419.5 319 66.8
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 3.4e-115 419.1 321 66.7
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 3.4e-115 419.1 322 66.8
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 9.8e-115 417.5 320 65.3
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.7e-114 416.8 253 78.7
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.1e-113 414.1 254 77.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.5e-112 409.1 289 69.9
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 7.7e-112 407.9 364 60.7
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.3e-111 407.1 244 79.1
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 3.3e-110 402.5 356 59.3
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.7e-109 398.7 293 66.6
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 6.1e-109 398.3 253 73.9
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 3.0e-108 396.0 254 74.8
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 5.7e-107 391.7 352 59.7
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 3.5e-104 382.5 255 71.4
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.9e-102 376.7 310 61.9
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 1.9e-102 376.7 331 62.5
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 6.2e-101 371.7 271 70.5
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 7.0e-97 358.2 306 59.2
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.5e-94 349.7 244 66.0
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.5e-94 349.7 244 66.0
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 2.5e-94 349.7 247 66.0
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 7.3e-94 348.2 253 64.0
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 4.0e-92 342.4 257 69.3
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 8.3e-90 334.7 244 68.9
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 3.9e-87 325.9 334 54.5
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 8.6e-79 298.1 298 50.0
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.7e-74 283.9 234 63.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 6.4e-74 282.0 298 53.0
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 3.5e-72 276.2 256 51.6
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.1e-69 266.9 205 65.9
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 2.8e-69 266.5 213 63.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-67 261.2 331 46.8
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.3e-66 257.7 207 59.9
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 4.9e-58 229.2 261 46.0
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 8.7e-55 218.4 240 51.2
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 9.6e-54 214.9 134 73.1
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 2.8e-53 213.4 134 72.4
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 2.6e-51 206.8 176 64.8
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-49 199.9 150 69.3
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.0e-42 176.0 88 88.6
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.0e-42 176.0 88 88.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.9e-33 147.5 133 61.7
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 3.6e-32 143.3 101 71.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.0e-31 141.7 144 54.9
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.5e-30 137.9 292 31.2
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.3e-29 134.8 185 42.7
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.1e-28 131.7 117 61.5
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-25 121.7 101 64.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.5e-25 120.6 110 57.3
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 9.4e-25 118.6 67 76.1
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-22 110.5 114 55.3
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-22 110.5 66 74.2
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 3.1e-20 103.6 181 38.7
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.0e-18 98.6 69 68.1
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 8.0e-16 89.0 43 95.3
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.7e-13 81.3 64 59.4
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.2e-11 75.1 46 71.7


User provided reference genes

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