Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-48 194.5 92 100.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.5e-22 107.1 67 79.1
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 7.5e-22 107.1 67 79.1
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 7.5e-22 107.1 67 79.1
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 4.8e-21 104.4 67 77.6
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 4.8e-21 104.4 67 77.6
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 4.8e-21 104.4 67 77.6
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 8.3e-21 103.6 67 77.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 4.1e-20 101.3 66 75.8
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.1e-20 101.3 67 76.1
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.1e-20 101.3 67 74.6
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 4.1e-20 101.3 67 74.6
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-19 99.8 67 74.6
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.0e-19 99.0 67 73.1
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.0e-19 99.0 67 73.1
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.5e-19 97.8 67 74.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.9e-19 97.4 67 73.1
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-18 95.9 67 73.1
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-18 95.5 63 74.6
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.9e-18 95.1 67 71.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-18 94.7 67 71.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 5.0e-18 94.4 67 71.6
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.1e-17 93.2 67 71.6
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.1e-17 93.2 67 71.6
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.1e-17 93.2 67 71.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.1e-17 93.2 67 71.6
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.1e-17 93.2 86 59.3
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.1e-17 93.2 66 71.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.5e-17 92.8 86 59.3
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.5e-17 92.8 86 59.3
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-17 92.8 65 72.3
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.9e-17 92.4 67 70.1
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.9e-17 92.4 66 72.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.9e-17 92.4 66 71.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.9e-17 92.4 67 70.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.9e-17 92.4 67 70.1
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.9e-17 92.4 67 70.1
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.5e-17 92.0 67 70.1
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 5.5e-17 90.9 67 70.1
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.2e-17 90.5 66 68.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.8e-16 88.6 86 57.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 2.8e-16 88.6 86 57.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 2.8e-16 88.6 86 57.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.8e-16 88.6 86 57.0
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 4.7e-16 87.8 67 68.7
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 4.7e-16 87.8 64 68.8
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 6.1e-16 87.4 68 67.6
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 2.3e-15 85.5 69 63.8
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 4.0e-15 84.7 67 64.2
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-14 83.2 63 66.7
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.5e-14 82.8 63 66.7
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.4e-14 81.3 63 63.5
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.7e-14 80.9 55 76.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.5e-14 80.5 52 78.8
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 4.9e-13 77.8 57 68.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 8.3e-13 77.0 65 58.5
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-11 72.4 47 74.5
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.8e-10 68.2 47 70.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.0e-10 67.8 55 67.3
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.6e-09 64.3 47 68.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 5.6e-09 64.3 44 72.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 9.5e-09 63.5 47 68.1
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-08 63.2 63 52.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 3.6e-08 61.6 47 66.0


User provided reference genes

Program Settings