Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.3e-37 156.4 80 100.0
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.1e-24 114.4 77 80.5
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 5.9e-23 110.5 71 81.7
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 5.9e-23 110.5 71 81.7
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 5.9e-23 110.5 71 84.5
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 7.7e-23 110.2 71 81.7
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.7e-22 109.0 71 81.7
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 2.2e-22 108.6 71 81.7
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.9e-22 108.2 71 80.3
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 2.9e-22 108.2 71 80.3
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 2.9e-22 108.2 71 80.3
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 5.0e-22 107.5 71 80.3
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 6.5e-22 107.1 71 80.3
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 8.5e-22 106.7 70 80.0
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.1e-21 106.3 71 80.3
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 1.1e-21 106.3 71 80.3
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.1e-21 106.3 71 80.3
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 1.1e-21 106.3 71 80.3
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 1.9e-21 105.5 70 80.0
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.9e-21 105.5 77 74.0
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 2.5e-21 105.1 68 82.4
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 78.6
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 80.0
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.5e-21 105.1 70 78.6
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 3.2e-21 104.8 71 80.3
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 3.2e-21 104.8 71 78.9
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 4.2e-21 104.4 71 78.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 7.2e-21 103.6 71 77.5
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 1.2e-20 102.8 71 77.5
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 1.6e-20 102.4 76 72.4
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 2.7e-20 101.7 70 78.6
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 3.6e-20 101.3 70 77.1
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 3.6e-20 101.3 70 77.1
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 3.6e-20 101.3 70 77.1
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 4.7e-20 100.9 70 80.0
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 4.7e-20 100.9 70 78.6
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 6.1e-20 100.5 68 79.4
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 6.1e-20 100.5 73 78.1
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 6.1e-20 100.5 71 76.1
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 7.9e-20 100.1 71 77.5
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 7.9e-20 100.1 64 82.8
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-19 99.4 74 71.6
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.8e-19 99.0 76 71.1
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 3.9e-19 97.8 68 77.9
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 3.9e-19 97.8 67 79.1
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 8.8e-19 96.7 70 74.3
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 1.5e-18 95.9 74 70.3
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 3.3e-18 94.7 61 82.0
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 3.3e-18 94.7 74 70.3
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 3.3e-18 94.7 74 70.3
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 9.7e-18 93.2 67 73.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 2.8e-17 91.7 74 66.2
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 3.7e-17 91.3 67 73.1
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 3.7e-17 91.3 74 67.6
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-16 89.7 67 70.1
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 1.1e-16 89.7 60 78.3
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-16 89.4 68 70.6
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-16 89.4 67 71.6
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 1.8e-16 89.0 74 64.9
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 2.4e-16 88.6 58 82.8
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 3.1e-16 88.2 71 69.0
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-16 88.2 70 68.6
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-16 88.2 67 70.1
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-16 88.2 67 70.1
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-16 86.7 67 70.1
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-16 86.7 67 67.2
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-15 86.3 73 65.8
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-15 86.3 71 64.8
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.2e-15 86.3 76 65.8
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-15 85.9 65 69.2
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-15 85.5 67 68.7
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-15 85.1 67 67.2
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-15 85.1 67 67.2
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 62.2
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-15 84.7 62 72.6
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-15 84.7 67 68.7
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 4.5e-15 84.3 65 69.2
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 1.0e-14 83.2 71 66.2
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.0e-14 83.2 71 69.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-14 83.2 66 68.2
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-14 83.2 65 67.7
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 2.2e-14 82.0 67 67.2
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 2.2e-14 82.0 57 75.4
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 2.9e-14 81.6 68 69.1
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-14 80.9 62 71.0
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-14 80.9 60 70.0
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 8.5e-14 80.1 59 71.2
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-13 79.7 59 71.2
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-13 79.3 65 67.7
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-13 79.3 67 65.7
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-13 78.6 59 69.5
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.2e-13 78.2 66 65.2
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 3.2e-13 78.2 56 71.4
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-13 78.2 67 65.7
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-13 78.2 67 64.2
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 4.2e-13 77.8 59 67.8
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 7.2e-13 77.0 67 62.7
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.6e-12 74.7 58 70.7
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 3.6e-12 74.7 49 83.7
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 3.6e-12 74.7 49 83.7
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 3.6e-12 74.7 57 70.2
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 4.7e-12 74.3 53 71.7
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.1e-12 73.9 71 62.0
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 6.1e-12 73.9 60 66.7
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 3.0e-11 71.6 59 64.4
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 4.0e-11 71.2 61 63.9
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 1.1e-10 69.7 54 70.4
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 2.0e-10 68.9 70 54.3
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 2.0e-10 68.9 70 54.3
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.0e-10 68.9 73 56.2
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.4e-10 67.8 65 63.1
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.5e-10 67.0 51 70.6
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 9.7e-10 66.6 70 51.4
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 2.8e-09 65.1 70 48.6
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 2.8e-09 65.1 70 48.6
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 3.7e-09 64.7 45 75.6
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 3.7e-09 64.7 45 75.6
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 3.7e-09 64.7 53 62.3
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 6.3e-09 63.9 74 54.1
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 6.3e-09 63.9 74 54.1
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 1.4e-08 62.8 47 72.3
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.4e-08 62.8 66 59.1
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 1.8e-08 62.4 45 71.1
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 2.4e-08 62.0 32 93.8
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 9.1e-08 60.1 40 75.0
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.2e-07 59.7 40 75.0
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-07 59.7 47 66.0
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 2.0e-07 58.9 37 81.1
CAN.G231.25 Capsicum annuum HOM05D006320 ORTHO05D007069 5.9e-07 57.4 53 56.6
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 1.0e-06 56.6 67 47.8
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 1.3e-06 56.2 70 51.4
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 1.3e-06 56.2 70 51.4
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 1.3e-06 56.2 70 51.4
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 1.3e-06 56.2 71 46.5
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-06 55.8 67 50.7
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.2e-06 55.5 58 53.4
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.5e-06 53.5 33 87.9


User provided reference genes

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