Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0440 Nicotiana tabacum HOM05D005210 ORTHO05D010080 1.6e-76 289.3 140 100.0
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.3e-45 184.1 131 75.6
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.2e-44 183.3 129 75.2
Nitab4.5_0000299g0070 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.9e-41 172.2 110 80.9
Nitab4.5_0000593g0150 Nicotiana tabacum HOM05D005210 ORTHO05D010080 1.4e-40 169.9 128 70.3
Nitab4.5_0006085g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010080 4.8e-36 154.8 111 73.9
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.1e-35 153.7 115 70.4
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.7e-25 119.8 68 82.4
BolSC28t60419H Brassica oleracea HOM05D001750 ORTHO05D001825 6.4e-25 117.9 68 80.9
BraSC224t45818Z Brassica rapa HOM05D001750 ORTHO05D001825 6.4e-25 117.9 68 80.9
BraSC77t46634Z Brassica rapa HOM05D001750 ORTHO05D001825 6.4e-25 117.9 68 80.9
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 6.4e-25 117.9 66 81.8
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 8.4e-25 117.5 69 78.3
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 1.1e-24 117.1 67 82.1
MBI06_g25392_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 1.9e-24 116.3 65 81.5
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.4e-24 115.9 66 81.8
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 9.3e-24 114.0 64 82.8
arahy.Tifrunner.gnm1.ann1.KJ11LV Arachis hypogaea HOM05D001750 ORTHO05D001825 2.7e-23 112.5 64 81.2
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 2.7e-23 112.5 65 81.5
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.5e-21 106.7 64 78.1
Nitab4.5_0001761g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 4.3e-21 105.1 64 82.8
TPR.G18545 Trifolium pratense HOM05D001750 ORTHO05D001825 5.6e-21 104.8 60 81.7
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 1.3e-20 103.6 66 78.8
PGSC0003DMG400020779 Solanum tuberosum HOM05D005210 ORTHO05D010080 1.3e-20 103.6 64 79.7
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.1e-20 102.8 65 81.5
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 3.7e-20 102.1 82 62.2
Lalb_Chr02g0153691 Lupinus albus HOM05D001750 ORTHO05D001825 8.1e-20 100.9 69 72.5
Cfa023010 Carpinus fangiana HOM05D005210 ORTHO05D010080 5.3e-19 98.2 66 72.7
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 5.3e-19 98.2 65 78.5
PGR069G0003 Punica granatum HOM05D005210 ORTHO05D010080 5.3e-19 98.2 71 73.2
Nn1g09997 Nelumbo nucifera HOM05D005210 ORTHO05D010080 9.0e-19 97.4 65 76.9
Nn1g10098 Nelumbo nucifera HOM05D005210 ORTHO05D010080 9.0e-19 97.4 65 76.9
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 3.4e-18 95.5 65 76.9
Lalb_Chr16g0386151 Lupinus albus HOM05D001750 ORTHO05D001825 4.5e-18 95.1 51 86.3
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 4.5e-18 95.1 70 71.4
MBI04_g15069_MAGBIO Magnolia biondii HOM05D005210 ORTHO05D010080 5.8e-18 94.7 65 75.4
Lalb_Chr17g0337351 Lupinus albus HOM05D001750 ORTHO05D001825 1.0e-17 94.0 53 83.0
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 1.0e-17 94.0 58 74.1
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 1.3e-17 93.6 68 66.2
arahy.Tifrunner.gnm1.ann1.00SNP9 Arachis hypogaea HOM05D005210 ORTHO05D010080 2.2e-17 92.8 69 69.6
arahy.Tifrunner.gnm1.ann1.883WGW Arachis hypogaea HOM05D005210 ORTHO05D010080 2.2e-17 92.8 69 69.6
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 2.2e-17 92.8 69 69.6
Cpa.g.sc38.57 Carica papaya HOM05D005210 ORTHO05D010080 2.2e-17 92.8 64 68.8
SHI23848 Sapria himalayana HOM05D001750 ORTHO05D001825 1.9e-16 89.7 61 68.9
DCAR_032434 Daucus carota HOM05D005210 ORTHO05D010080 5.5e-16 88.2 60 70.0
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 7.1e-16 87.8 68 64.7
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 9.3e-16 87.4 68 63.2
Ciclev10012798m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.6e-15 86.7 66 65.2
Atru.chr1.3624 Acer truncatum HOM05D005210 ORTHO05D010080 2.1e-15 86.3 70 68.6
CANSAT78G1777 Cannabis sativa HOM05D005210 ORTHO05D010080 2.1e-15 86.3 64 67.2
MELO3C028549.2 Cucumis melo HOM05D005210 ORTHO05D010080 2.7e-15 85.9 65 69.2
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 4.6e-15 85.1 54 74.1
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 4.6e-15 85.1 68 64.7
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 6.0e-15 84.7 54 74.1
RcHm_v2.0_Chr2g0148221 Rosa chinensis HOM05D005210 ORTHO05D010080 6.0e-15 84.7 64 68.8
AUR62004733 Chenopodium quinoa HOM05D005210 ORTHO05D010080 1.0e-14 84.0 67 59.7
VMungo0329G0007 Vigna mungo HOM05D005210 ORTHO05D010080 1.8e-14 83.2 72 62.5
AUR62037526 Chenopodium quinoa HOM05D005210 ORTHO05D010080 2.3e-14 82.8 67 59.7
Lsat_1_v5_gn_7_109460 Lactuca sativa HOM05D005210 ORTHO05D010080 3.9e-14 82.0 67 59.7
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 8.7e-14 80.9 138 38.4
Peaxi162Scf01267g00005 Petunia axillaris HOM05D005210 ORTHO05D010080 1.1e-13 80.5 43 88.4
Lalb_Chr02g0153671 Lupinus albus HOM05D005210 ORTHO05D010080 3.3e-13 79.0 50 78.0
Lalb_Chr03g0038471 Lupinus albus HOM05D005210 ORTHO05D010080 3.3e-13 79.0 50 78.0
Oeu061104.1 Olea europaea HOM05D000700 ORTHO05D010080 5.7e-13 78.2 65 60.0
Oeu020894.1 Olea europaea HOM05D005210 ORTHO05D010080 7.4e-13 77.8 66 60.6
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 9.6e-13 77.4 135 37.8
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 9.6e-13 77.4 135 37.8
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 9.6e-13 77.4 135 37.8
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 1.4e-11 73.6 73 52.1
Gohir.A10G199900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 1.8e-11 73.2 67 56.7
Gohir.A10G200000 Gossypium hirsutum HOM05D005210 ORTHO05D010080 4.1e-11 72.0 67 55.2
Ciclev10017151m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.2e-10 70.5 44 72.7
SGA_v2.0_scaffold167G38415 Striga asiatica HOM05D005210 ORTHO05D010080 2.6e-10 69.3 61 50.8
Migut.B01305 Erythranthe guttata HOM05D005210 ORTHO05D010080 7.6e-10 67.8 64 53.1
Ah.03g133380 Amaranthus hybridus HOM05D005210 ORTHO05D010080 1.0e-09 67.4 61 54.1
Gohir.D10G207900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 1.0e-09 67.4 67 50.7
Gorai.011G233600 Gossypium raimondii HOM05D005210 ORTHO05D010080 1.0e-09 67.4 67 50.7
Mapoly0141s0034 Marchantia polymorpha HOM05D001750 ORTHO05D001825 1.7e-09 66.6 56 53.6
SGA_v2.0_scaffold119G32726 Striga asiatica HOM05D005210 ORTHO05D010080 1.7e-09 66.6 61 47.5
MSTRG.20585 Avicennia marina HOM05D005210 ORTHO05D010080 2.2e-09 66.2 65 55.4
Aqoxy4G00327 Aquilegia oxysepala HOM05D005210 ORTHO05D010080 5.0e-09 65.1 65 49.2
SEGI_01777 Sequoiadendron giganteum HOM05D005210 ORTHO05D010080 8.5e-09 64.3 64 46.9
ECA236G2402 Erigeron canadensis HOM05D005210 ORTHO05D010080 5.5e-08 61.6 60 43.3
Nitab4.5_0003632g0030 Nicotiana tabacum HOM05D005210 ORTHO05D034847 3.6e-07 58.9 33 75.8
unitig_750.g28447 Utricularia gibba HOM05D005210 ORTHO05D010080 1.0e-06 57.4 61 47.5
Peaxi162Scf01462g00001 Petunia axillaris HOM05D005210 ORTHO05D010080 1.8e-06 56.6 26 96.2
Potri.007G062102 Populus trichocarpa HOM05D005210 ORTHO05D010080 1.8e-06 56.6 78 52.6
SalBow8G1406 Salvia bowleyana HOM05D005210 ORTHO05D010080 1.8e-06 56.6 65 44.6
SHI35587 Sapria himalayana HOM05D008193 ORTHO05D010324 8.7e-06 54.3 38 68.4


User provided reference genes

Program Settings