Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.6e-175 618.6 319 100.0
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.1e-127 459.5 356 74.2
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.3e-116 423.7 278 81.3
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.3e-116 423.7 278 81.3
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 2.1e-116 422.9 278 81.3
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 1.2e-111 407.1 278 79.9
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 8.7e-102 374.4 282 72.0
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.4e-99 367.1 278 70.5
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 1.8e-99 366.7 276 72.1
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 2.0e-98 363.2 280 70.0
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 2.0e-98 363.2 278 70.1
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 6.5e-97 358.2 280 68.2
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 5.5e-96 355.1 276 68.8
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 9.3e-96 354.4 280 68.9
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 9.3e-96 354.4 280 68.6
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 2.7e-95 352.8 280 68.6
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 3.5e-95 352.4 281 68.0
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.0e-94 350.9 276 69.2
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.3e-94 350.5 280 67.1
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.3e-94 350.5 280 68.2
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.3e-94 349.7 280 67.5
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 2.3e-94 349.7 280 66.8
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.3e-94 349.7 280 67.1
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.3e-94 349.7 284 67.6
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 5.1e-94 348.6 284 67.6
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 5.1e-94 348.6 284 68.0
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.5e-93 347.1 280 66.8
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.3e-93 345.9 280 67.1
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.1e-92 343.2 280 66.1
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 3.7e-92 342.4 281 66.9
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 4.8e-92 342.0 280 66.8
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 6.2e-92 341.7 281 67.6
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 8.2e-92 341.3 285 67.0
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 1.1e-91 340.9 287 66.6
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.4e-91 340.5 287 65.5
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.4e-91 340.5 280 66.4
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.8e-91 340.1 280 66.1
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 3.1e-91 339.3 288 67.7
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.1e-91 339.0 288 64.9
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 5.3e-91 338.6 286 66.1
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 6.9e-91 338.2 280 67.1
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.2e-90 337.4 283 66.1
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.2e-90 337.4 280 65.4
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.0e-90 336.7 280 65.0
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 7.6e-90 334.7 278 65.1
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 7.6e-90 334.7 276 64.9
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 7.6e-90 334.7 276 64.9
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.3e-89 334.0 280 64.3
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 2.2e-89 333.2 280 63.6
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 2.9e-89 332.8 281 65.5
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.8e-89 332.4 280 62.9
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 3.8e-89 332.4 280 62.9
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.8e-89 332.4 280 65.4
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 5.0e-89 332.0 276 63.8
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 5.0e-89 332.0 280 65.4
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 8.4e-89 331.3 271 65.3
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.1e-88 330.9 282 66.0
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.4e-88 330.5 276 64.9
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 1.4e-88 330.5 271 64.2
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 2.5e-88 329.7 271 64.2
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 5.5e-88 328.6 283 64.7
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 7.2e-88 328.2 276 63.4
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 7.2e-88 328.2 276 63.4
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 1.2e-87 327.4 276 64.5
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.6e-87 327.0 280 63.6
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.6e-87 327.0 276 63.0
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 2.1e-87 326.6 283 63.3
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 2.7e-87 326.2 276 64.9
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 3.5e-87 325.9 280 63.9
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 3.5e-87 325.9 276 65.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 7.9e-87 324.7 276 63.8
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.0e-86 324.3 285 63.9
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 3.9e-86 322.4 280 62.5
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.1e-86 322.0 280 62.1
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 6.7e-86 321.6 279 63.4
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 8.7e-86 321.2 284 63.7
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.1e-85 320.9 260 63.8
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 3.3e-85 319.3 280 62.5
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 7.4e-85 318.2 258 64.0
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 9.7e-85 317.8 282 62.4
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 2.8e-84 316.2 280 63.2
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.4e-83 313.2 272 62.9
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 3.1e-83 312.8 280 62.1
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 5.3e-83 312.0 276 62.0
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 5.3e-83 312.0 280 61.4
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 6.9e-83 311.6 276 63.4
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.2e-82 310.8 280 60.7
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.0e-82 310.1 280 60.7
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 5.9e-82 308.5 273 62.6
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 7.7e-82 308.1 279 60.9
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 1.3e-81 307.4 287 61.0
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 1.7e-81 307.0 273 60.1
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 6.5e-81 305.1 218 72.9
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 6.5e-81 305.1 239 65.7
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 6.5e-81 305.1 239 65.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 3.2e-80 302.8 282 59.9
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 7.2e-80 301.6 267 62.9
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 9.4e-80 301.2 282 59.6
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 2.1e-79 300.1 237 66.2
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 3.0e-78 296.2 283 60.1
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 5.1e-78 295.4 283 56.9
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 6.7e-78 295.0 283 58.3
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.3e-76 290.8 285 58.6
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 2.4e-75 286.6 275 59.6
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 3.4e-74 282.7 238 62.6
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 4.5e-74 282.3 220 67.7
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.6e-71 273.9 282 56.0
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.9e-70 269.2 297 53.5
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 2.4e-59 233.4 163 75.5
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 2.7e-58 229.9 344 48.8
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 4.2e-56 222.6 247 48.2
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.2e-53 214.5 240 50.8
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 1.3e-52 211.1 240 49.2
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.3e-49 201.1 280 50.0
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 2.9e-49 199.9 275 44.7
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 8.3e-44 181.8 131 76.3
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.6e-39 167.5 205 52.2
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 1.0e-38 164.9 121 73.6
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 2.3e-38 163.7 245 38.4
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 6.6e-33 145.6 109 71.6
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.1e-32 144.8 162 55.6
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.4e-28 129.0 91 76.9
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 5.4e-27 125.9 92 70.7
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 2.9e-20 103.6 251 31.1
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.7e-20 103.2 82 68.3
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 3.7e-20 103.2 329 32.5
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 8.3e-20 102.1 82 68.3
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.7e-18 97.1 257 30.7
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 3.3e-16 90.1 218 32.6
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.6e-15 87.8 70 68.6
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 3.6e-15 86.7 207 32.4
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.1e-14 85.1 59 79.7
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.1e-14 85.1 51 70.6
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.2e-13 81.6 97 42.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 6.4e-12 75.9 41 80.5
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 3.5e-10 70.1 44 72.7


User provided reference genes

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