Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.6e-137 492.7 239 100.0
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.5e-118 427.2 238 87.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-116 422.9 232 87.9
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-115 419.9 238 86.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.3e-115 419.1 232 87.1
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.0e-115 418.7 232 87.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-113 413.3 232 86.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.1e-112 408.7 234 85.9
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.3e-104 381.3 232 81.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 9.1e-104 380.6 236 77.1
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.2e-103 380.2 238 77.3
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.0e-102 374.8 233 77.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.5e-102 374.0 233 79.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-100 370.2 233 77.7
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.6e-100 369.8 231 78.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.1e-100 369.4 224 78.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.1e-100 369.4 224 78.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.4e-99 366.7 224 77.7
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.7e-99 364.4 232 75.9
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-98 363.2 224 77.2
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-98 363.2 224 77.2
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.0e-98 362.8 215 80.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.6e-98 362.5 224 76.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.3e-98 362.1 233 75.5
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 5.7e-98 361.3 229 76.9
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.5e-98 360.9 233 75.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.8e-97 359.0 255 70.2
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 2.8e-97 359.0 224 77.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.7e-97 358.6 233 75.5
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.7e-97 358.6 233 76.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.8e-97 358.2 234 75.2
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 6.3e-97 357.8 210 81.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 8.2e-97 357.5 232 76.3
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 8.2e-97 357.5 224 76.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.1e-96 357.1 234 74.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.1e-96 357.1 232 75.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.1e-96 357.1 233 73.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-96 356.3 232 75.9
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-96 356.3 234 74.8
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.4e-96 355.9 233 74.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.4e-96 355.9 233 74.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.4e-96 355.9 232 75.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.4e-96 355.9 233 73.8
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.4e-96 355.9 235 73.2
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.1e-96 355.5 224 76.3
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.1e-96 355.5 226 73.5
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.1e-96 355.1 227 73.1
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 5.3e-96 354.8 224 74.6
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 7.0e-96 354.4 234 72.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.1e-96 354.0 233 74.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.2e-95 353.6 224 76.8
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.6e-95 353.2 237 73.0
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.7e-95 352.4 233 72.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.0e-94 350.5 235 74.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.3e-94 350.1 232 74.1
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.3e-94 350.1 224 75.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.2e-94 349.4 233 71.2
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.9e-94 349.0 224 74.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 5.0e-94 348.2 238 71.8
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 5.0e-94 348.2 224 75.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.1e-93 347.1 218 76.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.5e-93 344.7 232 73.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 7.2e-93 344.4 235 69.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 7.2e-93 344.4 222 74.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.1e-92 342.8 227 73.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.7e-92 342.4 220 75.9
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.6e-92 342.0 214 75.2
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.6e-92 342.0 227 71.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.0e-91 340.5 222 74.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-91 340.1 249 68.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.8e-91 339.7 232 71.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-91 339.3 248 67.7
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 3.0e-91 339.0 216 74.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.2e-91 338.2 227 71.8
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 8.8e-91 337.4 224 71.0
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.5e-90 336.7 231 68.4
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 7.5e-90 334.3 210 77.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.3e-89 333.6 224 72.8
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.3e-89 330.9 235 72.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.3e-89 330.9 235 72.8
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.1e-88 328.9 275 62.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.1e-88 328.6 239 66.1
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.1e-88 328.6 214 72.9
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 4.1e-88 328.6 213 76.1
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 4.1e-88 328.6 213 76.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 5.4e-88 328.2 227 72.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.6e-87 326.6 238 70.2
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.0e-87 326.2 233 68.2
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.7e-87 325.9 224 71.9
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.5e-87 325.1 233 68.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.5e-87 325.1 214 74.3
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.7e-87 324.3 221 69.2
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.7e-87 324.3 179 87.7
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.0e-86 323.9 221 69.2
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.3e-86 323.6 209 72.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.7e-86 323.2 215 71.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.5e-86 321.2 224 67.4
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 8.6e-86 320.9 218 69.7
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.1e-85 320.5 212 74.1
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.5e-85 320.1 212 71.2
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.9e-85 319.7 219 69.9
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.9e-85 319.7 225 68.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.5e-85 319.3 235 67.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 3.3e-85 318.9 212 70.8
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 5.5e-85 318.2 221 67.9
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 5.5e-85 318.2 221 67.9
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 7.2e-85 317.8 215 68.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 9.5e-85 317.4 215 68.4
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 9.5e-85 317.4 221 67.9
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-84 317.0 232 70.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.2e-84 317.0 212 70.3
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.6e-84 316.6 212 70.3
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.1e-84 316.2 226 67.3
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 6.1e-84 314.7 242 65.7
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 8.0e-84 314.3 212 69.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 8.0e-84 314.3 206 71.4
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.5e-82 307.8 227 68.3
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.7e-81 306.6 232 65.1
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 3.7e-81 305.4 211 72.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.9e-81 305.1 212 70.8
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.1e-80 302.4 233 67.0
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 9.2e-80 300.8 212 67.0
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 3.6e-76 288.9 179 74.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.1e-76 288.1 232 65.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.6e-74 282.7 227 65.6
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.1e-72 277.3 158 82.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.4e-72 275.0 185 71.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 9.5e-69 264.2 235 58.3
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.1e-67 260.8 212 56.6
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 5.2e-67 258.5 233 58.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.3e-65 251.1 161 75.2
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.4e-64 250.4 192 67.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.9e-64 250.0 222 59.9
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.2e-60 237.3 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.5e-58 230.3 158 73.4
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.7e-54 216.9 213 50.7
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 4.7e-52 208.8 210 50.5
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.2e-50 204.1 185 58.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.0e-50 203.4 214 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 9.9e-50 201.1 214 51.4
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 9.2e-48 194.5 120 75.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.2e-47 194.1 145 68.3
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 9.0e-43 177.9 132 64.4
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.2e-42 177.6 168 54.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.1e-37 161.0 99 71.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.4e-35 154.1 213 39.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.3e-33 147.5 90 77.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 8.4e-33 144.8 152 49.3
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-31 141.0 157 49.7
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.8e-30 137.1 74 90.5
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.6e-29 132.1 217 39.6
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.6e-29 132.1 90 68.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.4e-27 127.5 103 65.0
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 9.3e-24 114.8 194 33.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.3e-24 114.8 66 81.8
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 4.6e-23 112.5 89 59.6
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.9e-21 107.1 80 68.8
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.0e-19 99.4 53 88.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.9e-17 92.4 75 60.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.4e-17 91.7 75 60.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-16 90.5 73 60.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.5e-16 89.0 73 58.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.5e-16 89.0 130 40.0
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 8.7e-14 81.6 225 28.4
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.3e-12 75.5 60 60.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.4e-11 73.6 54 68.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-11 73.2 48 70.8
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 5.3e-11 72.4 141 34.0
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.9e-08 63.9 53 60.4
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 7.2e-08 62.0 40 67.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 4.6e-07 59.3 32 84.4


User provided reference genes

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