Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 6.1e-186 654.1 341 100.0
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 1.3e-135 486.9 331 76.7
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 3.7e-135 485.3 283 87.6
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 5.1e-132 474.9 331 73.4
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 1.1e-131 473.8 333 74.8
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 3.3e-131 472.2 331 73.7
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 7.1e-126 454.5 304 76.0
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 2.0e-88 330.1 323 56.0
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 2.5e-86 323.2 324 53.7
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 9.3e-86 321.2 324 52.8
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 2.3e-84 316.6 326 53.1
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 2.5e-83 313.2 332 53.0
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 1.6e-82 310.5 322 52.8
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 2.2e-82 310.1 293 57.3
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 2.4e-81 306.6 321 53.6
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 4.1e-81 305.8 307 57.3
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 4.1e-81 305.8 339 49.6
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.2e-80 304.3 322 52.2
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 1.0e-79 301.2 329 53.8
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 1.0e-79 301.2 336 50.9
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 1.9e-78 297.0 322 51.9
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 2.5e-78 296.6 322 51.6
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 3.2e-78 296.2 319 51.1
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 9.4e-78 294.7 320 51.9
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 1.6e-77 293.9 320 51.2
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 1.0e-76 291.2 319 51.1
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 1.0e-76 291.2 319 51.1
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 1.4e-76 290.8 322 50.0
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 8.8e-76 288.1 323 50.2
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 1.1e-73 281.2 316 50.0
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 6.9e-73 278.5 321 49.5
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 2.2e-71 273.5 324 48.5
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 5.5e-70 268.9 324 46.6
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 7.2e-70 268.5 321 47.4
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 7.9e-69 265.0 291 50.9
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 1.0e-68 264.6 325 48.6
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 3.0e-68 263.1 323 48.6
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 6.7e-68 261.9 324 47.5
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 1.5e-67 260.8 239 56.1
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 4.4e-67 259.2 334 44.9
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 9.7e-67 258.1 327 44.3
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 1.3e-66 257.7 333 47.1
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 2.8e-66 256.5 331 44.7
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 3.1e-65 253.1 331 44.4
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 3.1e-65 253.1 336 46.7
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 9.1e-65 251.5 337 44.8
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.9e-63 246.5 351 42.7
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 3.8e-63 246.1 351 42.5
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 5.0e-63 245.7 316 44.6
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 1.1e-62 244.6 336 46.4
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 1.1e-62 244.6 325 44.6
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 1.5e-62 244.2 286 44.1
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 1.9e-62 243.8 336 46.4
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 3.2e-62 243.0 288 46.9
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 4.2e-62 242.7 330 42.7
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 7.2e-62 241.9 332 45.8
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 7.2e-62 241.9 291 47.4
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 9.4e-62 241.5 350 42.3
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.2e-61 241.1 322 42.9
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.2e-61 241.1 322 44.1
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 2.7e-61 240.0 336 45.8
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.6e-61 239.6 322 43.2
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 3.6e-61 239.6 334 40.4
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 6.1e-61 238.8 322 43.5
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 1.8e-60 237.3 338 44.1
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 1.8e-60 237.3 340 45.0
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 5.2e-60 235.7 333 45.3
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 8.8e-60 235.0 322 42.5
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 1.5e-59 234.2 342 44.7
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 2.6e-59 233.4 333 43.8
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 2.6e-59 233.4 335 44.2
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 2.6e-59 233.4 336 45.2
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 1.3e-58 231.1 339 43.4
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.3e-58 231.1 297 44.1
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 1.7e-58 230.7 336 43.2
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 8.2e-58 228.4 336 43.2
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 8.2e-58 228.4 335 42.4
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 1.4e-57 227.6 336 43.2
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 3.1e-57 226.5 284 46.1
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 4.5e-56 222.6 327 42.8
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 1.3e-55 221.1 348 40.2
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 1.3e-55 221.1 327 42.5
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 2.5e-54 216.9 338 39.9
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 4.7e-53 212.6 322 36.6
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 1.3e-50 204.5 335 38.5
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.6e-40 171.0 345 35.4
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 4.5e-40 169.5 348 36.8
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 1.9e-38 164.1 321 35.5
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 6.1e-37 159.1 218 44.5
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 6.1e-37 159.1 218 44.5
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.5e-35 154.5 241 40.2
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 1.7e-31 141.0 143 53.8
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 2.5e-30 137.1 298 30.2
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 2.5e-30 137.1 216 41.2
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 3.1e-28 130.2 105 66.7
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 6.8e-28 129.0 296 31.1
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 2.4e-25 120.6 154 48.1
Duzib168G1669 Durio zibethinus HOM05D007205 ORTHO05D009175 2.7e-24 117.1 151 46.4
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 1.0e-23 115.2 154 47.4
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 1.1e-22 111.7 249 35.3
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 4.3e-22 109.8 186 37.6
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 4.1e-17 93.2 103 48.5
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 1.0e-15 88.6 169 39.6
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.7e-15 87.8 289 28.4
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 6.2e-13 79.3 280 28.9
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 2.3e-12 77.4 287 24.4
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 3.1e-12 77.0 281 26.7
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 3.1e-12 77.0 279 27.6
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.2e-11 75.1 289 27.3
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 1.2e-11 75.1 302 24.5
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.5e-11 74.7 290 27.2
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 3.4e-11 73.6 305 24.6
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.3e-10 71.6 295 23.4
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 1.7e-10 71.2 335 24.8
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 2.2e-10 70.9 287 27.2
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 2.9e-10 70.5 292 25.7
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 8.4e-10 68.9 320 23.8
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 1.4e-09 68.2 247 24.7
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.4e-09 68.2 315 25.7
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.9e-09 67.8 307 28.0
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 3.2e-09 67.0 290 25.2
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 3.2e-09 67.0 357 25.8
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 4.1e-09 66.6 319 26.0
C03p03430 Brassica napus HOM05D007205 ORTHO05D009175 9.2e-09 65.5 67 55.2
BolC3t12884H Brassica oleracea HOM05D007205 ORTHO05D009175 9.2e-09 65.5 67 55.2
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 9.2e-09 65.5 290 24.1
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.2e-08 65.1 298 24.8
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 2.1e-08 64.3 136 33.8
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 2.1e-08 64.3 289 28.0
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.1e-08 64.3 290 24.8
Peaxi162Scf01343g00112 Petunia axillaris HOM05D010623 ORTHO05D012718 2.1e-08 64.3 305 24.3
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 2.7e-08 63.9 88 42.0
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 4.6e-08 63.2 288 25.0
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 4.6e-08 63.2 282 24.5
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 6.0e-08 62.8 289 24.9
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 6.0e-08 62.8 304 23.4
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.7e-07 61.2 341 27.0
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.7e-07 61.2 88 40.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.7e-07 61.2 88 40.9
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.7e-07 61.2 291 22.7
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.7e-07 61.2 262 29.8
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-07 60.8 286 23.4
Nitab4.5_0006512g0040 Nicotiana tabacum HOM05D010623 ORTHO05D012718 2.3e-07 60.8 286 23.1
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 3.0e-07 60.5 257 26.8
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 3.0e-07 60.5 260 29.2
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.9e-07 60.1 259 25.1
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 3.9e-07 60.1 293 24.9
SGA_v2.0_scaffold21G09432 Striga asiatica HOM05D049040 ORTHO05D009175 1.1e-06 58.5 66 43.9
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 1.5e-06 58.2 313 24.3
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.9e-06 57.8 256 23.0
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 2.5e-06 57.4 109 31.2
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.3e-06 57.0 127 32.3
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.3e-06 57.0 291 24.1
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 3.3e-06 57.0 77 37.7
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 3.3e-06 57.0 318 26.7
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 5.6e-06 56.2 88 38.6
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 7.3e-06 55.8 64 43.8
PGSC0003DMG400025202 Solanum tuberosum HOM05D010623 ORTHO05D012718 7.3e-06 55.8 332 22.9
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 9.6e-06 55.5 315 25.1
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 9.6e-06 55.5 120 31.7
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 9.6e-06 55.5 120 31.7
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 9.6e-06 55.5 279 25.1


User provided reference genes

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