Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.0e-221 770.0 405 100.0
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.4e-210 733.4 405 96.0
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.5e-178 629.0 405 84.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 9.5e-178 627.1 377 89.7
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.1e-177 625.9 377 89.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 8.0e-177 624.0 377 88.9
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.0e-171 607.1 398 83.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 2.3e-171 605.9 420 80.7
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.0e-168 595.5 389 83.0
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 4.0e-168 595.1 392 81.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.5e-167 593.2 403 79.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.4e-167 592.0 391 82.6
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.9e-166 589.0 378 83.1
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.9e-166 589.0 377 83.0
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.8e-165 586.3 409 79.2
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 3.2e-165 585.5 390 81.5
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.2e-165 585.5 373 83.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 9.2e-165 583.9 388 80.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.2e-164 583.6 410 78.0
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.6e-164 581.6 384 82.3
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 7.8e-164 580.9 380 82.1
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-163 580.5 388 81.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.3e-163 579.3 410 78.0
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.3e-163 579.3 395 79.5
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 5.0e-163 578.2 378 82.0
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.6e-163 577.8 399 79.7
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 3.3e-162 575.5 397 79.6
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.3e-162 575.1 384 81.5
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 4.3e-162 575.1 401 77.6
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 7.3e-162 574.3 383 80.7
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 9.5e-162 573.9 388 79.6
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.6e-161 573.2 372 80.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 2.1e-161 572.8 377 81.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 2.1e-161 572.8 402 77.1
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.8e-161 572.4 377 82.2
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 3.6e-161 572.0 406 77.1
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 8.0e-161 570.9 404 77.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 8.0e-161 570.9 400 77.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.1e-160 570.5 372 81.7
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.8e-160 569.7 405 75.6
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.1e-160 568.9 404 75.5
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.1e-160 568.9 390 79.2
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 5.2e-160 568.2 394 79.2
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 5.2e-160 568.2 375 81.1
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 5.2e-160 568.2 372 80.9
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.8e-160 567.8 408 76.0
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.2e-159 567.0 385 79.7
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.2e-159 567.0 404 76.2
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.5e-159 566.6 408 76.5
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.5e-159 566.6 395 77.2
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.6e-159 565.8 381 79.8
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.6e-159 565.8 411 74.9
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 4.4e-159 565.1 385 78.7
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.4e-159 565.1 366 81.4
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 4.4e-159 565.1 327 89.6
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.8e-159 564.7 379 80.2
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 5.8e-159 564.7 373 81.2
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.2e-158 562.8 396 78.0
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.2e-158 562.8 335 86.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.2e-158 562.8 388 79.6
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.9e-158 562.4 378 79.1
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 8.3e-158 560.8 404 75.2
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 8.3e-158 560.8 383 79.6
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.1e-157 560.5 410 74.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.1e-157 560.5 374 80.5
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.4e-157 560.1 413 74.3
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.9e-157 559.7 404 75.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.9e-157 559.7 380 79.2
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.4e-157 559.3 406 76.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.2e-157 558.9 345 83.5
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 9.2e-157 557.4 404 74.8
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 9.2e-157 557.4 404 74.8
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.2e-156 557.0 374 78.3
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.0e-156 556.2 380 78.2
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.7e-156 555.8 407 74.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.5e-156 555.4 395 76.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 7.8e-156 554.3 387 76.7
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 7.8e-156 554.3 389 76.9
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 7.8e-156 554.3 390 76.9
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.0e-155 553.9 374 78.1
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-155 553.1 404 74.0
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.7e-155 553.1 383 78.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.3e-155 552.7 382 77.7
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.3e-155 552.7 400 75.5
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.3e-155 552.7 400 75.5
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.0e-155 552.4 396 76.0
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.9e-155 552.0 382 77.7
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.9e-155 552.0 408 74.3
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.9e-155 552.0 408 74.3
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 5.0e-155 551.6 381 77.4
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 6.6e-155 551.2 406 73.9
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 6.6e-155 551.2 379 78.6
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.6e-155 550.8 431 71.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-154 549.3 383 77.3
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.5e-154 549.3 408 74.0
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.5e-154 549.3 408 74.0
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-153 546.6 398 76.6
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.6e-153 546.6 346 82.9
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 6.2e-153 544.7 385 77.4
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.5e-151 540.0 385 76.4
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 5.8e-151 538.1 373 76.9
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 7.5e-151 537.7 385 75.8
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 7.5e-151 537.7 394 75.4
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 9.9e-151 537.3 413 72.6
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.3e-150 537.0 383 76.0
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.2e-148 530.4 297 92.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.1e-148 529.6 378 74.9
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 3.0e-147 525.8 376 74.7
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 5.2e-144 515.0 388 71.9
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.2e-143 513.8 376 75.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 5.8e-143 511.5 374 76.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.9e-142 509.2 307 85.0
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-141 507.3 375 75.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 7.1e-141 504.6 297 87.5
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.6e-140 501.9 297 86.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 7.3e-138 494.6 330 78.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.4e-136 490.3 327 76.5
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 2.2e-134 483.0 347 76.9
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.8e-134 482.3 348 72.4
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.4e-133 480.3 354 74.0
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.6e-132 476.9 353 73.1
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.1e-125 454.1 417 65.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 9.3e-125 451.1 368 66.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 9.3e-125 451.1 365 66.6
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.7e-118 430.3 386 65.8
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 4.9e-118 428.7 272 84.9
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.2e-117 425.6 246 91.1
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.3e-113 414.1 321 69.5
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.6e-108 395.6 353 64.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 8.7e-107 391.3 333 61.6
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.7e-106 387.9 289 68.2
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 8.2e-97 358.2 309 60.8
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.9e-91 339.3 198 90.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 7.0e-80 302.0 198 81.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 7.0e-80 302.0 198 81.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.0e-75 288.1 165 88.5
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.4e-66 256.1 309 52.8
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.7e-62 244.2 294 44.9
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 6.1e-60 235.7 129 89.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 8.3e-57 225.3 293 43.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.6e-54 215.7 154 76.0
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 7.3e-53 212.2 324 41.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.0e-51 208.4 178 67.4
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 6.8e-51 205.7 220 58.6
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.1e-40 171.8 213 52.6
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-40 171.4 149 66.4
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 9.5e-37 158.7 129 69.0
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 7.8e-31 139.0 80 87.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.2e-28 129.4 92 67.4
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 7.6e-18 95.9 75 69.3
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 2.4e-16 90.9 48 95.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.3e-13 80.5 90 52.2
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 4.3e-13 80.1 50 76.0
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.1e-11 75.5 64 65.6
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 9.9e-10 68.9 42 69.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 4.9e-09 66.6 42 81.0


User provided reference genes

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