Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.6e-46 189.1 98 100.0
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.4e-42 175.3 98 90.8
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 6.9e-42 173.7 98 88.8
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.5e-41 172.6 97 88.7
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 3.4e-41 171.4 98 88.8
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 5.1e-37 157.5 98 80.6
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.2e-19 97.1 94 59.6
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.2e-19 97.1 94 59.6
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-17 93.2 98 57.1
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 1.6e-17 92.8 101 56.4
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.7e-16 89.4 99 57.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.8e-16 88.2 103 54.4
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.5e-15 86.3 93 58.1
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.1e-14 82.4 93 53.8
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 4.7e-14 81.3 91 59.3
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 8.0e-14 80.5 90 54.4
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.4e-13 79.7 94 55.3
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 2.3e-13 79.0 92 47.8
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 4.0e-13 78.2 106 49.1
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 5.2e-13 77.8 103 48.5
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 6.8e-13 77.4 96 49.0
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.2e-12 76.6 90 55.6
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.5e-12 76.3 87 51.7
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.6e-12 75.5 96 46.9
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.6e-12 75.5 98 50.0
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 3.4e-12 75.1 95 46.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 5.7e-12 74.3 91 51.6
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 7.5e-12 73.9 92 50.0
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 7.5e-12 73.9 103 46.6
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.3e-11 73.2 102 44.1
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.3e-11 73.2 102 44.1
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 1.3e-11 73.2 90 53.3
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-11 72.8 97 48.5
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.2e-11 72.4 82 52.4
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.2e-11 72.4 88 53.4
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.2e-11 72.4 88 50.0
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-11 71.6 84 51.2
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 3.7e-11 71.6 92 51.1
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.7e-11 71.6 96 45.8
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 4.8e-11 71.2 89 50.6
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 4.8e-11 71.2 96 45.8
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 4.8e-11 71.2 104 48.1
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 6.3e-11 70.9 100 48.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 6.3e-11 70.9 104 48.1
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 6.3e-11 70.9 94 51.1
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 8.3e-11 70.5 94 47.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 8.3e-11 70.5 97 49.5
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.4e-10 69.7 97 44.3
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.8e-10 69.3 92 51.1
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 1.8e-10 69.3 103 45.6
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 1.8e-10 69.3 91 49.5
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 3.1e-10 68.6 89 49.4
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 7.0e-10 67.4 100 47.0
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 7.0e-10 67.4 91 46.2
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 7.0e-10 67.4 96 45.8
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.1e-10 67.0 96 47.9
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 9.1e-10 67.0 86 47.7
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 9.1e-10 67.0 96 47.9
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 9.1e-10 67.0 97 49.5
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-09 66.6 88 51.1
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-09 66.6 88 52.3
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.6e-09 66.2 104 45.2
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 1.6e-09 66.2 54 63.0
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 2.0e-09 65.9 94 37.2
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.0e-09 65.9 88 51.1
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.0e-09 65.9 100 46.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 2.7e-09 65.5 92 43.5
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.7e-09 65.5 93 46.2
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.7e-09 65.5 89 47.2
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 3.5e-09 65.1 88 50.0
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 4.5e-09 64.7 87 47.1
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 5.9e-09 64.3 92 40.2
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 5.9e-09 64.3 94 44.7
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 5.9e-09 64.3 109 44.0
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 5.9e-09 64.3 92 43.5
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 7.7e-09 63.9 103 45.6
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.7e-09 63.9 92 43.5
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 7.7e-09 63.9 86 46.5
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.0e-08 63.5 102 43.1
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.0e-08 63.5 93 45.2
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.0e-08 63.5 85 43.5
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.3e-08 63.2 100 47.0
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.7e-08 62.8 105 43.8
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.2e-08 62.4 93 45.2
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.2e-08 62.4 61 55.7
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.2e-08 62.4 92 42.4
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 2.9e-08 62.0 61 55.7
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 2.9e-08 62.0 92 44.6
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.8e-08 61.6 78 44.9
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 3.8e-08 61.6 99 44.4
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 5.0e-08 61.2 86 43.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 6.5e-08 60.8 86 43.0
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.5e-08 60.8 86 48.8
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.5e-08 60.8 85 48.2
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 8.5e-08 60.5 49 61.2
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 8.5e-08 60.5 93 46.2
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.1e-07 60.1 61 52.5
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.5e-07 59.7 86 41.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-07 59.7 96 42.7
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.5e-07 59.7 92 41.3
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.9e-07 59.3 96 42.7
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.9e-07 59.3 90 41.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.9e-07 59.3 96 42.7
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 1.9e-07 59.3 87 48.3
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.9e-07 59.3 97 45.4
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.9e-07 59.3 61 54.1
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.5e-07 58.9 62 53.2
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.5e-07 58.9 86 43.0
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-07 58.9 86 46.5
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.2e-07 58.5 49 61.2
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.2e-07 58.5 100 42.0
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 4.2e-07 58.2 89 43.8
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 4.2e-07 58.2 95 43.2
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 4.2e-07 58.2 105 41.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 4.2e-07 58.2 93 46.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 4.2e-07 58.2 100 44.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 5.5e-07 57.8 49 61.2
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 5.5e-07 57.8 49 61.2
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 5.5e-07 57.8 95 44.2
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 7.2e-07 57.4 49 59.2
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 7.2e-07 57.4 49 59.2
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 7.2e-07 57.4 49 59.2
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 7.2e-07 57.4 84 42.9
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 7.2e-07 57.4 97 43.3
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 7.2e-07 57.4 86 41.9
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 7.2e-07 57.4 80 42.5
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 9.4e-07 57.0 81 42.0
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 9.4e-07 57.0 85 41.2
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-06 56.6 49 61.2
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-06 56.6 49 61.2
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.2e-06 56.6 49 61.2
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.2e-06 56.6 49 61.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.2e-06 56.6 94 42.6
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.2e-06 56.6 82 45.1
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.2e-06 56.6 97 42.3
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.2e-06 56.6 86 46.5
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.6e-06 56.2 87 44.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.1e-06 55.8 84 46.4
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 2.1e-06 55.8 85 47.1
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.7e-06 55.5 95 41.1
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.7e-06 55.5 101 41.6
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 2.7e-06 55.5 93 40.9
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 3.6e-06 55.1 87 43.7
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 4.7e-06 54.7 83 44.6
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 6.1e-06 54.3 87 44.8
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 8.0e-06 53.9 76 44.7
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 8.0e-06 53.9 86 44.2
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 8.0e-06 53.9 91 41.8


User provided reference genes

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