Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001118g0110 Nicotiana tabacum HOM05D010760 ORTHO05D014669 3.6e-268 927.9 557 100.0
Nitab4.5_0000509g0050 Nicotiana tabacum HOM05D010760 ORTHO05D014669 8.1e-103 378.6 364 63.2
Nitab4.5_0000509g0070 Nicotiana tabacum HOM05D010760 ORTHO05D014669 2.1e-58 231.1 213 72.8
Peaxi162Scf00026g00083 Petunia axillaris HOM05D010760 ORTHO05D014669 4.1e-46 190.3 220 54.5
PGSC0003DMG400021883 Solanum tuberosum HOM05D010760 ORTHO05D014669 4.4e-32 143.7 187 50.3
PGSC0003DMG400021886 Solanum tuberosum HOM05D010760 ORTHO05D014669 5.9e-29 133.3 181 47.5
Solyc01g010185.1 Solanum lycopersicum HOM05D010760 ORTHO05D014669 8.5e-28 129.4 123 57.7
Solyc01g010220.3 Solanum lycopersicum HOM05D010760 ORTHO05D014669 2.0e-24 118.2 170 42.9
PGSC0003DMG400021884 Solanum tuberosum HOM05D010760 ORTHO05D014669 2.0e-24 118.2 105 60.0
Peaxi162Scf00026g00913 Petunia axillaris HOM05D010760 ORTHO05D014669 2.6e-24 117.9 156 50.0
Sopen01g005810 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-24 117.9 108 57.4
Sopen01g005790 Solanum pennellii HOM05D010760 ORTHO05D014669 1.3e-23 115.5 188 43.1
Solyc01g010215.1 Solanum lycopersicum HOM05D010760 ORTHO05D014669 1.4e-22 112.1 174 43.1
Sopen01g005820 Solanum pennellii HOM05D010760 ORTHO05D014669 2.7e-21 107.8 92 60.9
Nitab4.5_0000871g0050 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.3e-15 89.0 98 44.9
Peaxi162Scf00202g00046 Petunia axillaris HOM05D002833 ORTHO05D003210 2.8e-15 87.8 104 45.2
Nitab4.5_0005846g0030 Nicotiana tabacum HOM05D002833 ORTHO05D003210 3.7e-15 87.4 108 44.4
Nitab4.5_0000305g0090 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.8e-14 85.1 95 48.4
Sopen01g005800 Solanum pennellii HOM05D010760 ORTHO05D014669 2.0e-13 81.6 75 56.0
Nitab4.5_0004147g0060 Nicotiana tabacum HOM05D002833 ORTHO05D000001 2.7e-13 81.3 99 45.5
Peaxi162Scf00031g00297 Petunia axillaris HOM05D010760 ORTHO05D003210 2.7e-13 81.3 98 41.8
Peaxi162Scf00019g00041 Petunia axillaris HOM05D002833 ORTHO05D000001 5.9e-13 80.1 99 45.5
Nitab4.5_0000498g0210 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.3e-12 79.0 104 43.3
Nitab4.5_0009589g0010 Nicotiana tabacum HOM05D010760 ORTHO05D003210 1.7e-12 78.6 108 40.7
Nitab4.5_0003766g0020 Nicotiana tabacum HOM05D002833 ORTHO05D000001 2.3e-12 78.2 99 44.4
Peaxi162Scf00023g01122 Petunia axillaris HOM05D010760 ORTHO05D000001 2.3e-12 78.2 75 52.0
Nitab4.5_0003362g0070 Nicotiana tabacum HOM05D002833 ORTHO05D000001 6.5e-12 76.6 90 43.3
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 2.5e-11 74.7 93 46.2
Nitab4.5_0000523g0100 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.2e-10 72.4 81 49.4
Nitab4.5_0000061g0370 Nicotiana tabacum HOM05D002833 ORTHO05D000001 8.0e-10 69.7 108 38.9
Peaxi162Scf00460g00045 Petunia axillaris HOM05D002833 ORTHO05D000001 4.0e-09 67.4 81 42.0
Nitab4.5_0007140g0030 Nicotiana tabacum HOM05D010760 ORTHO05D000001 8.8e-09 66.2 92 33.7
PGSC0003DMG400021882 Solanum tuberosum HOM05D042358 ORTHO05D037689 4.4e-08 63.9 66 54.5
Peaxi162Scf01254g00010 Petunia axillaris HOM05D015337 ORTHO05D019322 5.7e-08 63.5 65 53.8
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-07 62.0 104 40.4
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 1.7e-07 62.0 95 34.7
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-07 62.0 95 34.7
Solyc02g061920.2 Solanum lycopersicum HOM05D002833 ORTHO05D003210 1.7e-07 62.0 85 38.8
RcHm_v2.0_Chr5g0038991 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-07 61.6 94 36.2
Nitab4.5_0005858g0080 Nicotiana tabacum HOM05D010760 ORTHO05D000001 4.9e-07 60.5 81 42.0
AUR62025263 Chenopodium quinoa HOM05D002833 ORTHO05D003210 8.3e-07 59.7 119 32.8
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 8.3e-07 59.7 106 33.0
Ah.03g139420 Amaranthus hybridus HOM05D000002 ORTHO05D000001 2.4e-06 58.2 109 35.8
AT5G48050 Arabidopsis thaliana HOM05D002833 ORTHO05D003210 2.4e-06 58.2 77 41.6
ECA233G0728 Erigeron canadensis HOM05D002833 ORTHO05D003210 2.4e-06 58.2 92 37.0
HanXRQChr02g0054271 Helianthus annuus HOM05D002833 ORTHO05D003210 2.4e-06 58.2 113 29.2
AUR62042214 Chenopodium quinoa HOM05D002833 ORTHO05D003210 3.1e-06 57.8 113 34.5
AUR62023882 Chenopodium quinoa HOM05D002833 ORTHO05D003210 4.1e-06 57.4 85 36.5
AUR62024857 Chenopodium quinoa HOM05D002833 ORTHO05D003210 4.1e-06 57.4 67 41.8
AUR62037648 Chenopodium quinoa HOM05D002833 ORTHO05D003210 4.1e-06 57.4 98 32.7
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-06 57.4 94 36.2
Sopen00g009240 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 57.0 107 31.8
Sopen10g028380 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 57.0 107 31.8
HanXRQChr13g0410331 Helianthus annuus HOM05D000002 ORTHO05D000001 7.0e-06 56.6 94 35.1
RcHm_v2.0_Chr1g0376111 Rosa chinensis HOM05D009166 ORTHO05D000001 7.0e-06 56.6 93 33.3
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 7.0e-06 56.6 94 31.9
Solyc11g016945.1 Solanum lycopersicum HOM05D002833 ORTHO05D003210 7.0e-06 56.6 85 36.5
COL.COLO4_36674 Corchorus olitorius HOM05D042556 ORTHO05D000001 9.2e-06 56.2 86 31.4
ECA236G1804 Erigeron canadensis HOM05D000031 ORTHO05D000001 9.2e-06 56.2 95 32.6
TAR549G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.2e-06 56.2 85 37.6


User provided reference genes

Program Settings