Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.1e-175 619.0 330 100.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.4e-149 531.6 369 81.3
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-110 404.1 399 64.7
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.6e-109 399.4 399 64.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.9e-108 396.0 399 63.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.8e-95 352.1 385 61.6
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.7e-92 343.6 399 57.4
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-88 330.9 404 56.2
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.7e-87 325.9 403 55.8
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.8e-84 315.8 394 54.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.4e-83 313.9 405 54.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.2e-68 263.5 397 48.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.6e-66 257.3 405 49.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.7e-66 255.8 336 50.3
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.3e-65 253.4 342 52.6
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.3e-65 253.4 393 44.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.0e-65 253.1 416 46.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 5.2e-65 252.3 408 45.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-63 247.7 398 46.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.2e-61 241.1 397 45.1
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.2e-61 241.1 394 44.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.0e-61 240.4 409 44.5
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.6e-61 240.0 406 43.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.9e-61 238.8 403 45.4
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.3e-60 237.7 393 47.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.3e-60 237.7 405 45.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.5e-60 235.0 398 44.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 3.2e-59 233.0 395 44.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 7.2e-59 231.9 400 44.8
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.6e-58 230.7 388 44.1
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.7e-58 229.9 380 49.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-57 227.6 400 43.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.8e-57 227.3 390 46.7
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.8e-57 225.3 388 43.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.8e-57 225.3 386 44.3
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.0e-56 223.8 399 44.6
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 3.4e-56 223.0 412 42.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.4e-56 222.6 387 45.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.7e-56 222.2 396 42.2
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-55 221.1 403 43.4
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.2e-55 220.3 392 42.3
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.8e-55 219.9 415 42.7
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.7e-55 219.5 328 47.3
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.7e-55 219.5 412 44.2
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.3e-55 218.8 400 43.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 6.3e-55 218.8 405 43.7
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.1e-54 218.0 406 42.4
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-54 218.0 343 46.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.8e-54 217.2 408 44.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.1e-54 216.1 388 42.3
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.1e-54 216.1 394 44.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 7.0e-54 215.3 391 46.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.6e-53 214.2 313 47.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.0e-53 213.8 395 43.8
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.7e-52 210.7 404 41.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.0e-52 209.1 385 42.9
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.5e-51 206.8 395 43.5
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.6e-50 203.0 400 40.5
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 8.0e-50 201.8 388 42.0
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-49 201.4 397 41.8
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.8e-49 200.7 400 40.5
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.0e-49 199.5 390 43.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 8.8e-49 198.4 388 41.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 8.8e-49 198.4 419 38.9
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 8.8e-49 198.4 178 64.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.0e-48 197.2 397 43.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.6e-48 196.8 339 45.1
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.2e-47 193.7 364 43.4
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.1e-46 189.5 373 44.0
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.0e-46 188.7 374 41.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 9.1e-46 188.3 434 38.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.0e-45 187.2 365 39.5
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 7.7e-45 185.3 434 38.2
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.7e-44 184.1 356 40.2
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.9e-44 183.3 415 39.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.8e-44 183.0 384 40.6
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.6e-44 182.2 356 39.6
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.6e-44 182.2 393 41.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 8.6e-44 181.8 416 38.7
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 8.6e-44 181.8 391 40.9
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-43 181.4 369 39.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.1e-42 177.2 389 39.6
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.1e-42 177.2 391 41.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.8e-42 176.8 390 40.5
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 4.0e-41 172.9 367 39.0
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.8e-41 172.2 334 40.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 8.9e-41 171.8 384 39.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.4e-40 169.5 314 41.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.7e-39 166.4 398 38.4
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-38 164.1 320 44.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.4e-38 163.7 314 41.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.4e-38 163.7 390 37.7
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.4e-38 162.5 393 38.4
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.0e-36 158.3 210 55.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.7e-34 149.4 389 37.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.4e-33 147.9 286 43.0
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 4.0e-33 146.4 281 40.9
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 5.2e-33 146.0 316 40.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.2e-33 146.0 322 38.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.0e-32 144.1 289 42.9
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.4e-32 142.9 382 36.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.7e-31 141.0 388 34.3
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.2e-31 140.6 373 38.3
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 6.4e-31 139.0 394 34.3
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.4e-30 137.9 403 36.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.4e-30 137.9 378 37.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.4e-30 137.9 379 37.2
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 4.1e-30 136.3 388 37.4
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.4e-30 136.0 387 37.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.6e-29 134.4 365 38.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.0e-29 134.0 368 38.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 7.8e-29 132.1 270 38.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.3e-28 131.3 383 37.6
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-28 131.3 383 37.6
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.6e-28 128.6 304 40.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.1e-27 128.3 401 34.2
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 3.3e-27 126.7 367 37.9
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.3e-27 126.7 127 58.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 5.6e-27 125.9 398 33.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 8.1e-26 122.1 282 36.5
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.4e-24 116.7 186 46.8
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.8e-24 115.9 201 45.8
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.8e-24 115.9 201 45.8
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.9e-23 112.8 313 31.0
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.1e-22 111.7 424 31.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.9e-22 110.9 240 38.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-22 109.0 201 43.8
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-22 109.0 201 43.8
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.1e-21 107.5 328 33.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 5.1e-20 102.8 190 44.2
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.3e-19 99.0 203 41.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 4.7e-18 96.3 220 37.7
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 6.8e-17 92.4 115 53.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.4e-14 84.0 170 44.7
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.1e-12 76.3 279 31.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.5e-11 73.9 179 35.8
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 5.6e-11 72.8 103 51.5
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.4e-09 67.4 66 65.2
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-09 67.0 199 35.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.8e-09 65.9 199 35.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.9e-09 65.5 199 34.7
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-08 65.1 199 34.7
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-08 65.1 193 33.7
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-08 64.7 199 34.7
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 2.6e-08 63.9 83 45.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.4e-08 63.5 68 50.0
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 7.6e-08 62.4 168 37.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 9.9e-08 62.0 131 37.4
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 1.4e-06 58.2 135 40.0


User provided reference genes

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