Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001109g0090 Nicotiana tabacum HOM05D003543 ORTHO05D017182 7.2e-88 327.8 246 100.0
Nitab4.5_0004646g0090 Nicotiana tabacum HOM05D003543 ORTHO05D004112 2.5e-48 196.4 327 62.4
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 1.1e-43 181.0 292 42.1
Cc09_g00700 Coffea canephora HOM05D003543 ORTHO05D004112 1.9e-27 127.1 170 74.1
Solyc04g014810.3 Solanum lycopersicum HOM05D003543 ORTHO05D004112 9.6e-24 114.8 410 40.0
Sopen04g006940 Solanum pennellii HOM05D003543 ORTHO05D004112 2.1e-23 113.6 410 41.2
PGSC0003DMG400023602 Solanum tuberosum HOM05D003543 ORTHO05D004112 8.1e-23 111.7 410 44.6
CAN.G1263.22 Capsicum annuum HOM05D003543 ORTHO05D004112 1.1e-22 111.3 399 46.9
unitig_32.g11369 Utricularia gibba HOM05D003543 ORTHO05D004112 1.5e-21 107.5 156 54.5
Nitab4.5_0003626g0080 Nicotiana tabacum HOM05D003543 ORTHO05D004112 1.3e-20 104.4 416 40.9
PGSC0003DMG400013286 Solanum tuberosum HOM05D003543 ORTHO05D004112 1.9e-19 100.5 416 38.5
Solyc11g012440.1 Solanum lycopersicum HOM05D003543 ORTHO05D004112 9.3e-19 98.2 416 40.1
Peaxi162Scf00520g00221 Petunia axillaris HOM05D003543 ORTHO05D004112 1.6e-18 97.4 80 73.8
Sopen11g007180 Solanum pennellii HOM05D003543 ORTHO05D004112 3.5e-18 96.3 416 42.1
Peaxi162Scf00352g00096 Petunia axillaris HOM05D003543 ORTHO05D004112 6.0e-18 95.5 74 90.5
Nitab4.5_0000143g0100 Nicotiana tabacum HOM05D003543 ORTHO05D004112 3.9e-17 92.8 426 37.6
Nn2g11431 Nelumbo nucifera HOM05D001865 ORTHO05D004112 5.1e-17 92.4 130 46.2
QL05p069094 Quercus lobata HOM05D003543 ORTHO05D004112 5.1e-17 92.4 73 65.8
MSTRG.16032 Avicennia marina HOM05D003543 ORTHO05D004112 6.7e-17 92.0 74 87.8
Oeu030109.1 Olea europaea HOM05D003543 ORTHO05D004112 1.5e-16 90.9 74 64.9
Oeu022953.1 Olea europaea HOM05D003543 ORTHO05D004112 5.6e-16 89.0 74 63.5
Gohir.D06G161100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 7.4e-16 88.6 74 83.8
Gorai.010G188000 Gossypium raimondii HOM05D003543 ORTHO05D004112 7.4e-16 88.6 74 83.8
Prupe.4G008500 Prunus persica HOM05D003543 ORTHO05D004112 9.6e-16 88.2 71 64.8
PGR004G1420 Punica granatum HOM05D003543 ORTHO05D004112 9.6e-16 88.2 81 61.7
Migut.M01414 Erythranthe guttata HOM05D003543 ORTHO05D004112 1.3e-15 87.8 416 37.5
Lj1A1241T70 Lonicera japonica HOM05D003543 ORTHO05D004112 1.6e-15 87.4 72 84.7
CANSAT56G0448 Cannabis sativa HOM05D003543 ORTHO05D004112 2.1e-15 87.0 75 64.0
Actinidia26851 Actinidia chinensis HOM05D003543 ORTHO05D017182 2.8e-15 86.7 172 40.7
CiPaw.09G104000 Carya illinoinensis HOM05D003543 ORTHO05D004112 2.8e-15 86.7 74 63.5
Dinv32066 Davidia involucrata HOM05D003543 ORTHO05D004112 2.8e-15 86.7 74 82.4
Nn1g03263 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.8e-15 86.7 418 37.1
Hma1.2p1_0657F.1_g197030 Hydrangea macrophylla HOM05D003543 ORTHO05D004112 3.6e-15 86.3 73 84.9
MD05G1359600 Malus domestica HOM05D003543 ORTHO05D004112 3.6e-15 86.3 71 62.0
Actinidia04652 Actinidia chinensis HOM05D003543 ORTHO05D004112 4.8e-15 85.9 74 83.8
ClCG01G021420 Citrullus lanatus HOM05D003543 ORTHO05D004112 4.8e-15 85.9 90 55.6
Dinv05019 Davidia involucrata HOM05D003543 ORTHO05D004112 4.8e-15 85.9 89 57.3
Medtr2g026130 Medicago truncatula HOM05D003543 ORTHO05D004112 4.8e-15 85.9 72 81.9
TPR.G10581 Trifolium pratense HOM05D003543 ORTHO05D004112 4.8e-15 85.9 72 83.3
Ca_00736_v3 Cicer arietinum L. HOM05D003543 ORTHO05D004112 8.1e-15 85.1 72 83.3
CsaV3_6G048440 Cucumis sativus L. HOM05D003543 ORTHO05D004112 8.1e-15 85.1 89 55.1
Cfa000083 Carpinus fangiana HOM05D003543 ORTHO05D004112 1.1e-14 84.7 75 62.7
Haze_06957 Corylus avellana HOM05D003543 ORTHO05D004112 1.1e-14 84.7 75 62.7
Lj2A260T84 Lonicera japonica HOM05D003543 ORTHO05D004112 1.1e-14 84.7 73 82.2
Phvul.006G142100 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 1.1e-14 84.7 71 85.9
Sed0004311 Sechium edule HOM05D003543 ORTHO05D004112 1.1e-14 84.7 95 53.7
COL.COLO4_31904 Corchorus olitorius HOM05D003543 ORTHO05D004112 1.4e-14 84.3 90 54.4
Duzib235G1522 Durio zibethinus HOM05D003543 ORTHO05D004112 1.4e-14 84.3 74 82.4
Lj6g0020811 Lotus japonicus HOM05D003543 ORTHO05D004112 2.4e-14 83.6 70 80.0
Nn1g07428 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.4e-14 83.6 88 55.7
CSS0010074 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 3.1e-14 83.2 74 83.8
CSS0034148 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 3.1e-14 83.2 74 83.8
Migut.H01613 Erythranthe guttata HOM05D003543 ORTHO05D004112 3.1e-14 83.2 74 60.8
Manes.08G070984 Manihot esculenta HOM05D003543 ORTHO05D004112 4.0e-14 82.8 74 82.4
Atru.chr1.2368 Acer truncatum HOM05D003543 ORTHO05D004112 5.3e-14 82.4 91 53.8
Eucgr.D01428 Eucalyptus grandis HOM05D003543 ORTHO05D004112 5.3e-14 82.4 74 82.4
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 5.3e-14 82.4 76 61.8
Thecc.06G235100 Theobroma cacao HOM05D003543 ORTHO05D004112 5.3e-14 82.4 74 81.1
Gohir.A06G154400 Gossypium hirsutum HOM05D003543 ORTHO05D004112 6.9e-14 82.0 74 79.7
SGA_v2.0_scaffold7G03732 Striga asiatica HOM05D003543 ORTHO05D004112 6.9e-14 82.0 74 58.1
CSS0020081 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 9.0e-14 81.6 91 51.6
MELO3C007441.2 Cucumis melo HOM05D003543 ORTHO05D004112 9.0e-14 81.6 89 53.9
FvH4_3g00770 Fragaria vesca HOM05D003543 ORTHO05D004112 9.0e-14 81.6 71 84.5
Psat1g174720 Pisum sativum HOM05D003543 ORTHO05D004112 9.0e-14 81.6 72 84.7
VMungo0540G1194 Vigna mungo HOM05D003543 ORTHO05D004112 9.0e-14 81.6 90 53.3
FAN21G0242 Fragaria x ananassa HOM05D003543 ORTHO05D004112 1.2e-13 81.3 71 84.5
FAN25G1985 Fragaria x ananassa HOM05D003543 ORTHO05D004112 1.2e-13 81.3 71 84.5
Glyma.09G011300 Glycine max HOM05D003543 ORTHO05D004112 1.2e-13 81.3 72 83.3
RcHm_v2.0_Chr5g0001011 Rosa chinensis HOM05D003543 ORTHO05D004112 1.2e-13 81.3 71 84.5
arahy.Tifrunner.gnm1.ann1.09PW0C Arachis hypogaea HOM05D003543 ORTHO05D004112 1.5e-13 80.9 90 54.4
arahy.Tifrunner.gnm1.ann1.ZLF8NQ Arachis hypogaea HOM05D003543 ORTHO05D004112 1.5e-13 80.9 90 54.4
MD10G1335100 Malus domestica HOM05D003543 ORTHO05D004112 2.0e-13 80.5 87 55.2
SalBow8G1766 Salvia bowleyana HOM05D003543 ORTHO05D004112 2.0e-13 80.5 87 55.2
TWI63G1747 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 2.0e-13 80.5 88 52.3
PSO541G5465 Papaver somniferum HOM05D003543 ORTHO05D004112 2.6e-13 80.1 80 56.2
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 2.6e-13 80.1 75 58.7
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 2.6e-13 80.1 69 79.7
Ciclev10018015m.g Citrus clementina HOM05D003543 ORTHO05D004112 3.4e-13 79.7 89 51.7
Sed0014537 Sechium edule HOM05D003543 ORTHO05D004112 3.4e-13 79.7 86 53.5
Gohir.D05G178100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 5.8e-13 79.0 90 51.1
Gorai.009G183500 Gossypium raimondii HOM05D003543 ORTHO05D004112 5.8e-13 79.0 90 51.1
Actinidia02307 Actinidia chinensis HOM05D003543 ORTHO05D004112 7.6e-13 78.6 74 81.1
CAN.G696.20 Capsicum annuum HOM05D003543 ORTHO05D004112 1.3e-12 77.8 85 52.9
Cpa.g.sc75.99 Carica papaya HOM05D003543 ORTHO05D004112 1.3e-12 77.8 76 73.7
Duzib192G0760 Durio zibethinus HOM05D003543 ORTHO05D004112 1.3e-12 77.8 74 78.4
QL05p068721 Quercus lobata HOM05D003543 ORTHO05D004112 1.3e-12 77.8 95 50.5
Sc05g0009680 Simmondsia chinensis HOM05D003543 ORTHO05D004112 1.3e-12 77.8 70 60.0
AUR62021839 Chenopodium quinoa HOM05D003543 ORTHO05D004112 1.7e-12 77.4 142 37.3
Lalb_Chr18g0057071 Lupinus albus HOM05D003543 ORTHO05D004112 1.7e-12 77.4 70 62.9
PSO675G9394 Papaver somniferum HOM05D003543 ORTHO05D004112 1.7e-12 77.4 79 55.7
MSTRG.7156 Avicennia marina HOM05D003543 ORTHO05D004112 2.2e-12 77.0 87 51.7
CDE05G3523 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 2.2e-12 77.0 74 55.4
AUR62012814 Chenopodium quinoa HOM05D003543 ORTHO05D004112 2.2e-12 77.0 143 37.1
Gohir.A05G175100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 2.2e-12 77.0 90 50.0
PSO541G0019 Papaver somniferum HOM05D003543 ORTHO05D004112 2.2e-12 77.0 70 60.0
Rhsim13G0144100 Rhododendron simsii HOM05D003543 ORTHO05D004112 2.9e-12 76.6 83 55.4
THA.LOC104815484 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 2.9e-12 76.6 88 51.1
TWI38G1278 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 2.9e-12 76.6 72 80.6
Oeu002770.1 Olea europaea HOM05D003543 ORTHO05D004112 3.8e-12 76.3 81 55.6
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 4.9e-12 75.9 76 59.2
Duzib160G0009 Durio zibethinus HOM05D003543 ORTHO05D004112 4.9e-12 75.9 73 78.1
Carub.0007s2501 Capsella rubella HOM05D003543 ORTHO05D004112 6.4e-12 75.5 76 56.6
Glyma.07G266400 Glycine max HOM05D003543 ORTHO05D004112 6.4e-12 75.5 73 57.5
Lalb_Chr20g0119331 Lupinus albus HOM05D003543 ORTHO05D004112 6.4e-12 75.5 71 59.2
Aa31LG2G12560 Aethionema arabicum HOM05D003543 ORTHO05D004112 8.4e-12 75.1 92 50.0
CDE02G1583 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 8.4e-12 75.1 74 54.1
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 8.4e-12 75.1 96 49.0
CDE05G1329 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 1.1e-11 74.7 91 50.5
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 1.1e-11 74.7 76 56.6
VMungo1215G1690 Vigna mungo HOM05D003543 ORTHO05D004112 1.1e-11 74.7 74 78.4
AT4G16490 Arabidopsis thaliana HOM05D003543 ORTHO05D004112 1.4e-11 74.3 73 57.5
Glyma.15G115800 Glycine max HOM05D003543 ORTHO05D004112 1.9e-11 73.9 72 79.2
Phvul.003G084700 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 2.4e-11 73.6 73 78.1
SGA_v2.0_scaffold7G03734 Striga asiatica HOM05D003543 ORTHO05D004112 2.4e-11 73.6 87 52.9
AL7G38470 Arabidopsis lyrata HOM05D003543 ORTHO05D004112 3.2e-11 73.2 73 57.5
Glyma.17G007900 Glycine max HOM05D003543 ORTHO05D004112 3.2e-11 73.2 74 55.4
PSO781G0286 Papaver somniferum HOM05D003543 ORTHO05D004112 4.2e-11 72.8 88 51.1
Sabra16G0014300 Salix brachista HOM05D003543 ORTHO05D004112 4.2e-11 72.8 97 45.4
Sp7g15040 Schrenkiella parvula HOM05D003543 ORTHO05D004112 4.2e-11 72.8 92 47.8
TAR626G1558 Trochodendron aralioides HOM05D003543 ORTHO05D004112 4.2e-11 72.8 82 50.0
TAR631G0001 Trochodendron aralioides HOM05D003543 ORTHO05D004112 4.2e-11 72.8 87 48.3
HPP92_006094 Vanilla planifolia HOM05D003543 ORTHO05D004112 4.2e-11 72.8 68 58.8
Oeu047063.1 Olea europaea HOM05D003543 ORTHO05D004112 5.5e-11 72.4 82 50.0
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 7.1e-11 72.0 76 55.3
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 7.1e-11 72.0 69 58.0
vmacro03632 Vaccinium macrocarpon HOM05D003543 ORTHO05D004112 7.1e-11 72.0 96 46.9
BolC7t45317H Brassica oleracea HOM05D003543 ORTHO05D004112 9.3e-11 71.6 84 53.6
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 9.3e-11 71.6 71 63.4
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 9.3e-11 71.6 83 51.8
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 9.3e-11 71.6 74 55.4
Aqoxy4G02200 Aquilegia oxysepala HOM05D003543 ORTHO05D004112 1.2e-10 71.2 73 78.1
Lsat_1_v5_gn_4_63420 Lactuca sativa HOM05D003543 ORTHO05D004112 1.2e-10 71.2 75 56.0
BcaC09g50355 Brassica carinata HOM05D003543 ORTHO05D004112 1.6e-10 70.9 92 47.8
BcaNung00189 Brassica carinata HOM05D003543 ORTHO05D004112 1.6e-10 70.9 89 49.4
BcaNung02874 Brassica carinata HOM05D003543 ORTHO05D004112 1.6e-10 70.9 84 53.6
C01p26290 Brassica napus HOM05D003543 ORTHO05D004112 1.6e-10 70.9 89 48.3
C07p47940 Brassica napus HOM05D003543 ORTHO05D004112 1.6e-10 70.9 84 53.6
BolC1t02576H Brassica oleracea HOM05D003543 ORTHO05D004112 1.6e-10 70.9 89 48.3
BraA03t14083Z Brassica rapa HOM05D003543 ORTHO05D004112 1.6e-10 70.9 84 53.6
DCAR_004899 Daucus carota HOM05D003543 ORTHO05D004112 1.6e-10 70.9 88 52.3
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 1.6e-10 70.9 76 55.3
A01p21010 Brassica napus HOM05D003543 ORTHO05D004112 2.1e-10 70.5 92 48.9
A03p49880 Brassica napus HOM05D003543 ORTHO05D004112 2.1e-10 70.5 84 53.6
BraA01t02016Z Brassica rapa HOM05D003543 ORTHO05D004112 2.1e-10 70.5 92 48.9
CARHR222890 Cardamine hirsuta HOM05D003543 ORTHO05D004112 2.1e-10 70.5 73 54.8
PGR042G2126 Punica granatum HOM05D003543 ORTHO05D004112 2.1e-10 70.5 97 48.5
Ah.09g234170 Amaranthus hybridus HOM05D003543 ORTHO05D004112 3.5e-10 69.7 96 45.8
MELO3C024097.2 Cucumis melo HOM05D000318 ORTHO05D004112 3.5e-10 69.7 62 87.1
Zm00001eb325810 Zea mays HOM05D030178 ORTHO05D004112 3.5e-10 69.7 68 55.9
Aa31LG9G12240 Aethionema arabicum HOM05D003543 ORTHO05D004112 4.6e-10 69.3 92 46.7
Thhalv10025098m.g Eutrema salsugineum HOM05D003543 ORTHO05D004112 4.6e-10 69.3 70 57.1
unitig_32.g11370 Utricularia gibba HOM05D003543 ORTHO05D004112 4.6e-10 69.3 90 50.0
unitig_748.g7602 Utricularia gibba HOM05D003543 ORTHO05D004112 6.0e-10 68.9 79 51.9
CiPaw.10G079000 Carya illinoinensis HOM05D003543 ORTHO05D004112 7.9e-10 68.6 64 82.8
Zm00001eb107940 Zea mays HOM05D030178 ORTHO05D004112 7.9e-10 68.6 107 43.0
Potri.016G010800 Populus trichocarpa HOM05D003543 ORTHO05D004112 1.0e-09 68.2 100 44.0
MSTRG.14606 Avicennia marina HOM05D003543 ORTHO05D004112 1.3e-09 67.8 86 48.8
Sc24g0000310 Simmondsia chinensis HOM05D003543 ORTHO05D004112 1.8e-09 67.4 72 65.3
EL10Ac8g20219 Beta vulgaris HOM05D003543 ORTHO05D004112 2.3e-09 67.0 90 46.7
MELO3C018383.2 Cucumis melo HOM05D019617 ORTHO05D017182 2.3e-09 67.0 48 64.6
Lj4A116T83 Lonicera japonica HOM05D000952 ORTHO05D000757 2.3e-09 67.0 86 45.3
Lsat_1_v5_gn_7_13800 Lactuca sativa HOM05D003543 ORTHO05D004112 6.7e-09 65.5 92 45.7
Sabra06G0010600 Salix brachista HOM05D003543 ORTHO05D004112 1.1e-08 64.7 103 42.7
DCAR_030861 Daucus carota HOM05D003543 ORTHO05D004112 1.3e-07 61.2 73 46.6
TPR.G3807 Trifolium pratense HOM05D004466 ORTHO05D005007 1.6e-07 60.8 169 69.2
ATR0712G168 Amborella trichopoda HOM05D003543 ORTHO05D004112 2.1e-07 60.5 67 50.7
Nn3g17714 Nelumbo nucifera HOM05D003543 ORTHO05D004112 4.0e-06 56.2 32 84.4
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 4.0e-06 56.2 57 50.9


User provided reference genes

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