Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 2.2e-140 502.3 250 100.0
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 1.1e-120 436.8 251 85.7
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 9.8e-117 423.7 249 85.1
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 6.4e-100 367.9 249 73.5
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 7.1e-99 364.4 249 73.5
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 6.0e-98 361.3 249 72.3
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 6.0e-98 361.3 249 72.7
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 8.1e-95 350.9 249 71.1
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 4.4e-93 345.1 275 65.8
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 9.9e-93 344.0 249 67.5
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 4.6e-90 335.1 304 59.5
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 6.6e-89 331.3 249 64.7
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 1.9e-88 329.7 249 64.3
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 4.7e-87 325.1 249 63.1
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 8.1e-87 324.3 249 63.9
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 4.0e-86 322.0 249 63.1
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 4.0e-86 322.0 249 63.5
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 6.9e-86 321.2 249 62.7
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 8.9e-86 320.9 249 63.5
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 8.9e-86 320.9 249 62.2
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 2.6e-85 319.3 249 61.8
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 9.9e-85 317.4 247 61.9
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 1.7e-84 316.6 249 64.3
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.7e-84 316.6 249 63.1
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 2.2e-84 316.2 249 62.7
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 1.1e-83 313.9 245 63.7
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 1.9e-83 313.2 249 62.2
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.4e-83 312.8 249 60.2
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.4e-83 312.8 249 60.2
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 3.2e-83 312.4 249 63.1
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 4.2e-83 312.0 249 61.8
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 4.2e-83 312.0 249 61.0
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 7.1e-83 311.2 249 61.8
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.2e-82 310.5 249 61.4
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 1.2e-82 310.5 249 61.8
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 2.1e-82 309.7 249 62.2
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 2.1e-82 309.7 249 61.8
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 2.7e-82 309.3 249 62.2
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 2.7e-82 309.3 249 61.4
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 2.7e-82 309.3 249 60.6
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 2.7e-82 309.3 249 62.2
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 3.5e-82 308.9 249 62.2
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 7.8e-82 307.8 245 62.9
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 7.8e-82 307.8 241 63.5
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 7.8e-82 307.8 249 60.6
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 1.0e-81 307.4 249 61.4
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.3e-81 307.0 243 62.1
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.7e-81 306.6 243 62.1
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 2.3e-81 306.2 249 60.2
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 3.0e-81 305.8 249 59.8
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 3.0e-81 305.8 249 60.2
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 3.9e-81 305.4 244 61.1
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 3.9e-81 305.4 249 61.0
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 3.9e-81 305.4 247 61.5
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 5.1e-81 305.1 243 61.7
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 8.7e-81 304.3 249 60.2
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 1.1e-80 303.9 249 59.8
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.5e-80 303.5 249 60.2
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.9e-80 303.1 249 59.8
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 2.5e-80 302.8 249 59.4
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 7.3e-80 301.2 238 61.3
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 7.3e-80 301.2 249 59.0
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 2.1e-79 299.7 249 59.4
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 2.1e-79 299.7 262 56.9
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 2.1e-79 299.7 262 56.9
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 8.1e-79 297.7 238 60.9
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 1.1e-78 297.4 238 60.9
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 1.4e-78 297.0 249 59.0
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.4e-78 297.0 249 58.2
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.8e-78 296.6 249 58.2
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 4.0e-78 295.4 247 60.3
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 2.0e-77 293.1 245 58.4
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 5.8e-77 291.6 215 66.0
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 7.6e-77 291.2 258 56.6
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 1.3e-76 290.4 249 57.0
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 1.7e-76 290.0 247 58.3
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 2.2e-76 289.7 222 64.0
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 8.4e-76 287.7 222 63.1
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 1.1e-75 287.3 249 56.6
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.9e-75 286.6 238 60.1
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 9.3e-75 284.3 249 56.2
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 1.6e-74 283.5 234 59.0
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 1.6e-74 283.5 232 59.5
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 1.6e-74 283.5 232 59.5
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 1.6e-74 283.5 232 59.5
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 1.6e-74 283.5 232 59.5
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 1.6e-74 283.5 232 59.5
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 7.9e-74 281.2 242 57.4
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.3e-73 280.4 235 58.7
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.3e-73 280.4 232 59.1
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.8e-73 280.0 265 54.0
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 3.9e-73 278.9 242 57.0
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 5.1e-73 278.5 242 56.6
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 5.1e-73 278.5 236 59.3
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 7.4e-72 274.6 251 55.0
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.3e-71 273.9 238 55.0
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.6e-71 273.5 240 57.1
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 3.6e-71 272.3 243 56.0
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 5.3e-70 268.5 239 55.6
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 6.9e-70 268.1 222 61.3
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 1.5e-69 266.9 239 55.2
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 7.6e-69 264.6 240 55.0
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 9.9e-69 264.2 249 52.2
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 3.8e-68 262.3 248 56.5
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 3.8e-68 262.3 245 53.1
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 4.9e-68 261.9 243 53.5
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 4.9e-68 261.9 243 53.5
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 8.4e-68 261.2 238 53.4
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.1e-67 260.8 238 54.2
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 3.2e-67 259.2 247 52.2
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 1.6e-66 256.9 238 52.5
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 2.7e-66 256.1 215 59.5
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 2.7e-66 256.1 249 53.8
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 2.7e-66 256.1 222 56.8
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.3e-65 253.1 236 50.4
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 1.9e-64 250.0 216 56.9
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.9e-64 250.0 214 61.2
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.3e-63 247.3 246 50.0
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 2.8e-63 246.1 244 50.4
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 8.1e-63 244.6 254 51.6
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 8.1e-63 244.6 246 51.6
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 6.9e-62 241.5 244 52.0
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 1.5e-61 240.4 213 55.9
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 1.3e-60 237.3 208 56.7
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 2.2e-60 236.5 270 47.0
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 3.7e-55 219.2 193 59.6
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 4.1e-54 215.7 238 44.5
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 2.0e-53 213.4 216 46.8
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 3.8e-52 209.1 241 44.4
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.1e-48 197.6 186 54.8
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 3.3e-48 196.1 179 55.3
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.3e-44 184.1 262 39.7
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 5.0e-44 182.2 262 38.9
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 4.2e-43 179.1 205 46.8
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 2.0e-40 170.2 207 44.0
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 1.7e-39 167.2 171 49.1
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 4.8e-39 165.6 160 51.2
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 9.1e-38 161.4 172 52.3
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 9.1e-38 161.4 249 36.5
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 4.5e-37 159.1 238 37.8
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 2.2e-36 156.8 167 47.3
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 5.3e-30 135.6 114 58.8
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 2.0e-29 133.7 86 72.1
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 8.8e-25 118.2 93 55.9
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 2.9e-20 103.2 86 53.5
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 4.2e-19 99.4 79 60.8
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 4.2e-19 99.4 215 33.5
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 9.4e-19 98.2 73 60.3
vmacro22183 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 5.7e-16 89.0 97 49.5
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 7.5e-16 88.6 58 67.2
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 2.7e-13 80.1 292 24.0
ATR0618G325 Amborella trichopoda HOM05D004398 ORTHO05D005268 2.8e-07 60.1 185 25.4
SEGI_22963 Sequoiadendron giganteum HOM05D004398 ORTHO05D005268 4.1e-06 56.2 196 23.0
Solyc08g067440.2 Solanum lycopersicum HOM05D004398 ORTHO05D005268 7.0e-06 55.5 197 26.4


User provided reference genes

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