Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-131 472.6 240 100.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.3e-128 461.1 240 97.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-113 413.3 241 88.4
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.8e-112 409.5 241 87.6
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.8e-112 409.5 241 87.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 5.3e-112 407.9 241 87.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.8e-99 364.0 240 75.4
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-94 350.5 240 74.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 5.0e-94 348.2 240 74.2
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.0e-91 340.5 240 73.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-89 333.2 241 71.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.3e-85 318.9 240 68.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 8.0e-84 314.3 242 67.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.0e-83 313.9 246 66.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-83 313.5 222 70.7
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 4.9e-81 305.1 247 63.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 7.0e-80 301.2 240 64.2
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.6e-79 298.5 240 63.8
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.9e-78 295.4 240 63.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.9e-78 295.4 241 64.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.6e-78 294.7 240 63.3
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 6.6e-78 294.7 241 63.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.5e-77 292.7 241 63.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.3e-77 292.4 175 83.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.3e-77 292.4 240 62.9
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.2e-76 290.4 243 60.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-76 290.4 258 60.5
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.1e-76 289.7 247 64.4
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.6e-76 288.9 246 64.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.7e-76 288.5 241 62.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 6.2e-76 288.1 256 60.5
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.4e-75 287.0 256 59.0
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.1e-75 285.8 241 62.2
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.2e-75 285.0 247 64.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 5.2e-75 285.0 246 58.5
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 6.8e-75 284.6 246 61.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.2e-74 283.9 241 60.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.0e-74 283.1 240 60.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 3.4e-74 282.3 242 63.2
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.4e-74 282.3 251 59.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.8e-74 281.6 243 60.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.8e-74 281.6 246 59.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 7.5e-74 281.2 253 61.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.7e-73 280.0 240 59.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.2e-73 279.6 245 61.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.7e-73 278.9 248 61.7
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.7e-73 278.9 238 64.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.7e-73 278.9 238 64.7
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.7e-73 278.9 240 58.3
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 6.4e-73 278.1 239 59.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.4e-73 278.1 238 63.9
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 8.3e-73 277.7 241 60.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.1e-72 277.3 241 59.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.1e-72 277.3 241 59.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-72 277.3 241 61.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.4e-72 276.9 244 61.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.4e-72 276.2 241 62.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.4e-72 276.2 250 60.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.2e-72 275.8 241 61.4
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 4.1e-72 275.4 237 58.2
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 4.1e-72 275.4 246 58.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-72 275.0 242 59.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 5.4e-72 275.0 244 61.1
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.2e-71 273.9 249 57.0
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-71 273.9 243 60.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.6e-71 273.5 249 59.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-71 273.1 240 61.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-71 273.1 200 68.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.1e-71 273.1 238 62.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.1e-71 273.1 238 61.3
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 4.6e-71 271.9 244 59.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.0e-71 271.6 249 60.6
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.8e-71 271.2 242 60.3
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 7.8e-71 271.2 239 60.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.3e-70 269.6 246 58.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.3e-70 269.6 246 58.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.3e-70 269.6 242 61.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.3e-70 269.6 242 61.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.0e-70 269.2 245 58.0
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.0e-70 269.2 235 60.4
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 6.6e-70 268.1 239 60.3
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 6.6e-70 268.1 239 60.3
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 244 57.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 8.6e-70 267.7 238 61.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 8.6e-70 267.7 239 60.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 8.6e-70 267.7 239 60.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-69 267.3 180 72.2
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.1e-69 267.3 246 54.1
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.3e-69 265.8 181 72.4
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.3e-69 265.8 180 71.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.3e-69 265.4 180 71.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.3e-69 265.4 237 58.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 9.5e-69 264.2 178 73.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 9.5e-69 264.2 183 71.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-68 263.5 178 71.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.6e-68 262.3 186 69.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 4.7e-68 261.9 246 54.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.4e-67 260.4 177 68.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.4e-67 260.4 237 56.1
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.8e-67 260.0 246 58.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.2e-67 258.5 178 71.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 8.9e-67 257.7 235 57.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 163 76.1
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 245 57.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 9.9e-66 254.2 255 53.7
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.2e-65 253.1 246 58.1
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.2e-65 253.1 259 52.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.8e-65 252.3 246 55.3
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.8e-65 252.3 178 66.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.9e-65 251.9 230 59.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.1e-64 250.8 244 57.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-64 250.0 215 60.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.4e-64 249.6 176 68.2
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.4e-64 249.6 244 54.9
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.1e-63 246.5 244 53.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.7e-63 246.1 247 53.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.5e-63 245.7 236 54.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.0e-63 245.0 213 57.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 7.8e-63 244.6 244 53.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.3e-62 243.8 244 54.5
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.6e-62 241.1 219 61.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.9e-61 240.0 242 54.1
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.9e-61 240.0 232 56.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.5e-61 239.6 234 56.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.1e-60 236.5 165 66.7
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.2e-59 231.9 151 73.5
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.8e-58 228.4 163 66.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 5.8e-58 228.4 172 62.8
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 5.8e-58 228.4 172 62.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 2.9e-57 226.1 172 62.8
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.4e-56 223.0 247 50.2
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-56 222.6 147 72.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.5e-55 219.2 240 49.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.6e-55 218.8 195 56.4
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.0e-54 217.6 173 59.5
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.5e-53 213.8 181 58.0
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.5e-53 213.0 228 52.2
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.9e-51 204.9 164 63.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.9e-49 198.7 232 47.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 5.4e-48 195.3 163 62.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-44 184.1 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-41 174.1 147 61.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.7e-36 156.0 112 65.2
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 7.6e-34 148.3 205 38.5
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 3.2e-32 142.9 150 50.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 9.3e-32 141.4 213 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.5e-31 139.4 208 36.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.0e-31 138.7 106 61.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.2e-28 130.2 193 38.3
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.1e-24 117.9 202 33.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-21 106.7 76 65.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.2e-20 103.6 106 51.9
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.4e-19 100.1 86 58.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.4e-18 96.3 164 36.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.3e-14 83.6 74 50.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.9e-09 66.6 53 58.5
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.9e-09 66.6 53 58.5
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 3.8e-09 66.2 63 52.4


User provided reference genes

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