Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.2e-26 119.8 68 100.0
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.3e-23 112.5 65 98.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.2e-22 107.8 65 92.3
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.6e-21 105.5 65 89.2
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.6e-21 105.5 65 89.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.4e-20 102.4 60 93.3
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.8e-20 102.1 65 84.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.8e-20 102.1 65 84.6
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.0e-20 101.3 65 87.7
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.0e-20 100.9 60 91.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.2e-20 100.5 68 82.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 6.8e-20 100.1 65 86.2
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.8e-20 100.1 65 86.2
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.5e-19 99.0 63 85.7
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 2.0e-19 98.6 63 87.3
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.6e-19 98.2 60 88.3
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 2.6e-19 98.2 67 85.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.4e-19 97.8 65 83.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 7.5e-19 96.7 65 83.1
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.5e-19 96.7 65 83.1
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 7.5e-19 96.7 63 81.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.5e-19 96.7 66 84.8
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.5e-19 96.7 65 81.5
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 9.7e-19 96.3 65 83.1
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-18 95.9 65 81.5
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-18 95.9 65 81.5
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.2e-18 95.1 66 83.3
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.2e-18 95.1 65 83.1
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.8e-18 94.7 66 84.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.8e-18 94.0 64 82.8
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 4.8e-18 94.0 68 82.4
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 8.3e-18 93.2 65 83.1
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 8.3e-18 93.2 65 83.1
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.1e-17 92.8 65 81.5
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.1e-17 92.8 65 80.0
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.4e-17 92.4 65 80.0
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 83.3
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.8e-17 92.0 64 81.2
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.8e-17 92.0 66 81.8
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.8e-17 92.0 66 81.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 2.4e-17 91.7 65 80.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.4e-17 91.7 60 83.3
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.4e-17 91.7 65 78.5
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 3.1e-17 91.3 67 83.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 4.1e-17 90.9 61 86.9
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 5.3e-17 90.5 61 86.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 7.0e-17 90.1 66 83.3
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 7.0e-17 90.1 65 78.5
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 7.0e-17 90.1 63 76.2
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.1e-17 89.7 67 77.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 66 81.8
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-16 89.4 68 77.9
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.2e-16 89.4 61 85.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.0e-16 88.6 67 79.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.0e-16 88.6 67 79.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.5e-16 87.8 67 76.1
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.5e-16 87.8 67 77.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.5e-16 87.8 71 73.2
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.5e-16 87.8 71 73.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.5e-16 87.4 67 73.1
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 4.5e-16 87.4 66 78.8
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 5.9e-16 87.0 61 83.6
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.7e-16 86.7 68 76.5
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.7e-16 86.7 63 81.0
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.0e-15 86.3 67 77.6
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 6.5e-15 83.6 60 80.0
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.5e-15 83.6 64 75.0
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 6.5e-15 83.6 65 76.9
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 6.5e-15 83.6 67 74.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.5e-15 83.2 66 74.2
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.5e-14 82.4 68 70.6
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-14 82.4 68 70.6
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.9e-14 82.0 70 72.9
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.9e-14 82.0 60 80.0
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 3.2e-14 81.3 62 75.8
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.2e-14 80.9 63 69.8
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 5.5e-14 80.5 63 69.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.1e-13 78.6 70 68.6
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 2.7e-13 78.2 66 68.2
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 3.6e-13 77.8 63 68.3
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.6e-13 77.8 67 68.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 6.1e-13 77.0 59 78.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.1e-13 77.0 52 84.6
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 8.0e-13 76.6 56 80.4
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.3e-12 75.1 63 66.7
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.3e-12 75.1 44 95.5
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 4.0e-12 74.3 66 65.2
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 4.0e-12 74.3 66 65.2
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 4.0e-12 74.3 73 65.8
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 5.2e-12 73.9 65 66.2
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 6.8e-12 73.6 61 62.3
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 6.8e-12 73.6 61 62.3
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.2e-11 72.8 64 67.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.2e-11 72.8 64 67.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 2.6e-11 71.6 63 66.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.8e-10 68.2 58 63.8
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 6.3e-10 67.0 57 71.9
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.4e-09 65.9 65 66.2
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 5.4e-09 63.9 54 66.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 60 58.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-08 62.0 58 60.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.7e-08 61.6 54 66.7
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.7e-08 61.6 58 63.8
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.5e-08 61.2 58 60.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 3.5e-08 61.2 58 62.1
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 4.5e-08 60.8 76 53.9
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.5e-08 60.8 56 58.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.5e-08 60.8 56 58.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 4.5e-08 60.8 54 63.0
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.9e-08 60.5 54 64.8
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 5.9e-08 60.5 58 60.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.7e-08 60.1 60 58.3
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.7e-08 60.1 60 60.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.7e-08 60.1 60 60.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.3e-07 59.3 52 65.4
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-07 59.3 54 64.8
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.7e-07 58.9 60 63.3
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.7e-07 58.9 54 63.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.9e-07 58.2 58 62.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.8e-07 57.8 54 61.1
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.0e-07 57.4 54 61.1
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 6.6e-07 57.0 57 59.6
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 6.6e-07 57.0 55 60.0
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.6e-07 57.0 59 55.9
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 8.6e-07 56.6 55 60.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 8.6e-07 56.6 61 50.8
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 59.3
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.5e-06 55.8 58 60.3
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.5e-06 55.8 56 58.9
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.9e-06 55.5 53 60.4
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.5e-06 55.1 60 56.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 3.3e-06 54.7 57 52.6
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.3e-06 54.7 57 52.6
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.3e-06 54.7 57 52.6
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 4.2e-06 54.3 57 56.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.2e-06 54.3 57 56.1
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.5e-06 53.9 62 54.8
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.2e-06 53.5 55 60.0
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 9.5e-06 53.1 62 50.0
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 9.5e-06 53.1 74 48.6
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.5e-06 53.1 58 56.9
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.5e-06 53.1 54 59.3


User provided reference genes

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