Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001086g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.6e-114 413.7 212 100.0
Nitab4.5_0000581g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-56 223.8 241 54.4
Nitab4.5_0006078g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.9e-54 214.9 243 50.6
Nitab4.5_0000024g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.2e-46 190.7 270 44.8
Nitab4.5_0002496g0090 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.4e-44 181.0 248 48.8
Nitab4.5_0004353g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-43 178.3 242 47.5
Nitab4.5_0001199g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-39 167.5 340 36.8
Nitab4.5_0004695g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-39 167.5 289 40.1
Nitab4.5_0000644g0170 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.5e-36 156.4 111 74.8
Nitab4.5_0001369g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.7e-35 152.9 111 73.0
Nitab4.5_0001523g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.6e-35 152.5 110 71.8
Nitab4.5_0006718g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.7e-35 152.1 109 76.1
Nitab4.5_0000049g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.7e-34 148.3 110 69.1
Nitab4.5_0000007g0330 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.6e-33 146.4 112 69.6
Nitab4.5_0000318g0200 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.3e-33 146.0 209 44.5
Nitab4.5_0003082g0100 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.3e-33 146.0 110 70.9
PGSC0003DMG400039811 Solanum tuberosum HOM05D001309 ORTHO05D000385 9.7e-33 144.4 111 68.5
Nitab4.5_0001645g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.8e-32 142.9 224 43.3
Nitab4.5_0003202g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.8e-32 142.1 268 39.6
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.2e-32 141.4 315 35.6
Nitab4.5_0000999g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-31 140.6 315 34.0
Nitab4.5_0002385g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-31 140.6 215 45.1
Nitab4.5_0000067g0100 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-31 140.2 252 40.1
Nitab4.5_0000415g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-31 140.2 110 67.3
Nitab4.5_0000866g0110 Nicotiana tabacum HOM05D001309 ORTHO05D009935 1.6e-30 137.1 102 73.5
Nitab4.5_0000774g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.7e-30 134.8 110 66.4
Nitab4.5_0000769g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-29 133.7 99 72.7
Nitab4.5_0000009g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.0e-29 132.1 108 64.8
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.0e-29 132.1 262 37.4
Nitab4.5_0007152g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.2e-28 129.4 245 39.6
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 1.2e-27 127.5 327 31.5
Nitab4.5_0004285g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.1e-27 126.7 100 67.0
Nitab4.5_0003690g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.7e-27 125.6 141 51.8
Nitab4.5_0003905g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-27 125.2 253 35.6
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.0e-26 124.4 257 35.8
Nitab4.5_0008316g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.0e-26 124.4 197 46.2
Nitab4.5_0000580g0310 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-26 124.0 105 66.7
Nitab4.5_0003433g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-26 124.0 110 64.5
Nitab4.5_0003703g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-26 123.2 179 45.8
Nitab4.5_0008724g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-26 123.2 246 38.6
Nitab4.5_0000039g0160 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.0e-26 122.5 99 65.7
PGSC0003DMG400042577 Solanum tuberosum HOM05D001309 ORTHO05D000385 6.8e-26 121.7 111 62.2
Nitab4.5_0003611g0020 Nicotiana tabacum HOM05D001309 ORTHO05D009935 9.8e-25 117.9 99 65.7
Nitab4.5_0012715g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-24 117.5 108 63.0
Nitab4.5_0001282g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.8e-24 116.3 256 37.1
Nitab4.5_0003836g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.8e-24 116.3 104 62.5
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.7e-24 115.9 337 32.0
Nitab4.5_0008492g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.3e-24 115.2 86 72.1
Nitab4.5_0000423g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.3e-24 114.8 283 33.9
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-23 114.4 253 36.8
Nitab4.5_0016483g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.2e-22 110.9 272 33.5
Nitab4.5_0008635g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.9e-22 108.6 56 87.5
Nitab4.5_0003082g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-21 107.1 56 87.5
Nitab4.5_0007229g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.2e-21 106.7 60 81.7
Nitab4.5_0010582g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.2e-21 106.7 64 76.6
Nitab4.5_0004210g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.8e-21 105.9 114 56.1
Nitab4.5_0001132g0060 Nicotiana tabacum HOM05D001309 ORTHO05D009935 8.5e-21 104.8 105 58.1
Nitab4.5_0008994g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.5e-21 104.8 55 89.1
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 1.9e-20 103.6 306 30.1
Nitab4.5_0001313g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.9e-20 103.6 269 32.7
Nitab4.5_0007229g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.5e-20 103.2 88 64.8
Nitab4.5_0004891g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.5e-20 102.1 320 31.6
Nitab4.5_0001388g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.7e-19 99.0 86 60.5
Nitab4.5_0000577g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-19 98.6 64 78.1
Nitab4.5_0002459g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-19 98.6 97 56.7
Nitab4.5_0000781g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-18 97.4 54 87.0
Nitab4.5_0010441g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-18 97.4 83 66.3
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 1.8e-18 97.1 58 77.6
Nitab4.5_0006065g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-18 97.1 114 50.9
Nitab4.5_0001481g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.8e-18 94.7 55 78.2
Nitab4.5_0015781g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.5e-17 94.0 56 78.6
Nitab4.5_0001128g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.6e-17 93.2 168 40.5
Nitab4.5_0003283g0020 Nicotiana tabacum HOM05D001309 ORTHO05D009935 2.6e-17 93.2 109 52.3
Peaxi162Scf00032g00919 Petunia axillaris HOM05D001309 ORTHO05D000385 2.6e-17 93.2 57 75.4
PGSC0003DMG400046524 Solanum tuberosum HOM05D001309 ORTHO05D000385 5.7e-17 92.0 56 75.0
Nitab4.5_0000789g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.5e-17 91.7 56 76.8
Nitab4.5_0000522g0140 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-16 90.5 56 73.2
Nitab4.5_0000220g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.9e-16 89.0 77 61.0
Nitab4.5_0002530g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.3e-16 88.6 95 53.7
Nitab4.5_0000151g0380 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-15 87.0 113 49.6
Nitab4.5_0000928g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-15 87.0 52 73.1
Nitab4.5_0005765g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-15 87.0 77 55.8
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 2.4e-15 86.7 61 67.2
Nitab4.5_0002263g0100 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.6e-14 84.0 72 63.9
Nitab4.5_0003339g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.0e-14 83.6 54 74.1
Nitab4.5_0000285g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.7e-14 83.2 55 72.7
Nitab4.5_0026778g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.5e-14 82.4 86 57.0
Nitab4.5_0014570g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.0e-13 81.3 74 64.9
Nitab4.5_0008623g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-13 80.5 56 71.4
Nitab4.5_0003970g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.8e-13 79.3 136 42.6
Nitab4.5_0003622g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.5e-12 76.6 49 75.5
Nitab4.5_0000898g0150 Nicotiana tabacum HOM05D001309 ORTHO05D009935 3.3e-12 76.3 55 74.5
Nitab4.5_0000931g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.1e-11 73.6 89 51.7
Nitab4.5_0000261g0180 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.8e-11 73.2 44 81.8
Nitab4.5_0000440g0140 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.7e-11 72.4 40 82.5
Nitab4.5_0000522g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.7e-11 72.4 62 59.7
Nitab4.5_0005558g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-11 72.0 43 74.4
Solyc04g150154.1 Solanum lycopersicum HOM05D001309 ORTHO05D000385 1.0e-10 71.2 221 29.0
Nitab4.5_0002232g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-10 70.9 49 69.4
Nitab4.5_0014949g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-10 70.9 53 71.7
Nitab4.5_0000740g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-10 70.1 50 66.0
Nitab4.5_0007969g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-10 70.1 54 68.5
Nitab4.5_0001130g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.0e-10 69.7 41 75.6
Nitab4.5_0001556g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.0e-10 69.7 195 32.3
Nitab4.5_0010256g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.8e-10 68.6 44 72.7
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.9e-10 68.2 48 68.8
Nitab4.5_0005502g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.9e-10 68.2 39 82.1
Nitab4.5_0008766g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.2e-09 67.8 56 62.5
Nitab4.5_0005502g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.5e-09 67.4 111 45.0
Nitab4.5_0002263g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.0e-09 67.0 39 74.4
Nitab4.5_0004438g0040 Nicotiana tabacum HOM05D001309 ORTHO05D009935 2.6e-09 66.6 56 66.1
Nitab4.5_0008584g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.4e-09 66.2 41 73.2
Nitab4.5_0001199g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.5e-09 65.1 43 74.4
Nitab4.5_0001490g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.5e-09 65.1 49 63.3
Nitab4.5_0002530g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.5e-09 65.1 60 58.3
Nitab4.5_0006526g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.5e-09 65.1 36 77.8
Nitab4.5_0000524g0110 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.8e-09 64.7 45 64.4
Nitab4.5_0003433g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.8e-09 64.7 31 90.3
Nitab4.5_0004688g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.8e-09 64.7 54 63.0
Nitab4.5_0002419g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-08 64.3 56 57.1
Solyc04g150151.1 Solanum lycopersicum HOM05D001309 ORTHO05D000385 2.2e-08 63.5 48 60.4
Nitab4.5_0007957g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.9e-08 63.2 43 69.8
Nitab4.5_0005861g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.7e-08 62.8 50 64.0
TWI60G1041 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.9e-08 62.4 190 30.5
Nitab4.5_0014671g0010 Nicotiana tabacum HOM05D001309 ORTHO05D009935 1.4e-07 60.8 52 65.4
Gohir.A12G105966 Gossypium hirsutum HOM05D040140 ORTHO05D000385 1.8e-07 60.5 57 54.4
Nitab4.5_0008623g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-07 60.5 41 75.6
Zm00001eb395400 Zea mays HOM05D008576 ORTHO05D000385 1.8e-07 60.5 176 27.3
Nitab4.5_0002925g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.4e-07 60.1 43 62.8
Nitab4.5_0003427g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.4e-07 58.9 42 71.4
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 5.4e-07 58.9 54 51.9
Peaxi162Scf00050g00139 Petunia axillaris HOM05D001309 ORTHO05D000385 5.4e-07 58.9 35 74.3
Nitab4.5_0000356g0120 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.0e-07 58.5 86 46.5
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 7.0e-07 58.5 54 51.9
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 1.2e-06 57.8 57 43.9
Os05g0202500 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 1.2e-06 57.8 56 51.8
Solyc04g150152.1 Solanum lycopersicum HOM05D001309 ORTHO05D000385 1.2e-06 57.8 34 73.5
Zm00001eb239860 Zea mays HOM05D008576 ORTHO05D000385 1.6e-06 57.4 128 29.7
AUR62041080 Chenopodium quinoa HOM05D008576 ORTHO05D000385 2.7e-06 56.6 73 39.7
Zm00001eb235160 Zea mays HOM05D002305 ORTHO05D000385 2.7e-06 56.6 135 28.9
Zm00001eb333630 Zea mays HOM05D008576 ORTHO05D000385 2.7e-06 56.6 120 30.8
Os07g0212400 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 3.5e-06 56.2 52 51.9
Zm00001eb420260 Zea mays HOM05D002305 ORTHO05D000385 4.6e-06 55.8 132 28.8
Gohir.A01G193333 Gossypium hirsutum HOM05D021375 ORTHO05D022808 7.8e-06 55.1 57 50.9
Zm00001eb190070 Zea mays HOM05D008576 ORTHO05D000385 7.8e-06 55.1 120 30.0
Zm00001eb226540 Zea mays HOM05D008576 ORTHO05D000385 7.8e-06 55.1 132 28.8
Zm00001eb234630 Zea mays HOM05D008576 ORTHO05D000385 7.8e-06 55.1 120 30.0


User provided reference genes

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