Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001078g0120 Nicotiana tabacum HOM05D009290 ORTHO05D009597 5.9e-148 527.7 307 100.0
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 8.7e-91 337.8 406 61.1
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 2.4e-72 276.6 208 89.9
Nitab4.5_0017029g0010 Nicotiana tabacum HOM05D008455 ORTHO05D009597 4.8e-65 252.3 208 84.1
Nitab4.5_0022706g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.1e-53 214.5 261 50.6
Nitab4.5_0001988g0060 Nicotiana tabacum HOM05D009290 ORTHO05D009597 2.6e-50 203.4 139 77.7
Manes.06G115750 Manihot esculenta HOM05D009290 ORTHO05D009597 8.0e-44 181.8 370 33.2
Nitab4.5_0007164g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.7e-41 174.1 216 50.0
Nitab4.5_0014285g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.2e-39 167.9 288 43.4
Nitab4.5_0000030g0320 Nicotiana tabacum HOM05D009290 ORTHO05D009597 2.8e-33 146.7 156 57.7
Nitab4.5_0002907g0070 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.0e-30 138.3 187 48.7
Nitab4.5_0010317g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.1e-29 134.8 106 68.9
Nitab4.5_0001261g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 2.8e-28 130.2 149 54.4
Manes.11G024650 Manihot esculenta HOM05D008455 ORTHO05D009597 6.8e-27 125.6 149 45.6
Manes.17G118642 Manihot esculenta HOM05D008455 ORTHO05D009597 6.8e-27 125.6 149 45.0
Manes.17G119328 Manihot esculenta HOM05D008455 ORTHO05D009597 1.3e-25 121.3 149 44.3
Nitab4.5_0001756g0100 Nicotiana tabacum HOM05D009290 ORTHO05D009597 2.4e-24 117.1 109 59.6
Nitab4.5_0005770g0030 Nicotiana tabacum HOM05D009290 ORTHO05D009597 4.3e-21 106.3 185 41.1
EL10Ac6g14371 Beta vulgaris HOM05D008455 ORTHO05D009597 5.6e-21 105.9 150 40.0
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 9.5e-21 105.1 143 40.6
EL10Ac9g22691 Beta vulgaris HOM05D008455 ORTHO05D009597 1.2e-20 104.8 143 40.6
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 1.6e-20 104.4 143 40.6
EL10Ac3g06519 Beta vulgaris HOM05D008455 ORTHO05D009597 2.8e-20 103.6 151 39.1
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 2.8e-20 103.6 143 40.6
Ah.06g194520 Amaranthus hybridus HOM05D000711 ORTHO05D000545 3.6e-20 103.2 143 39.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 8.0e-20 102.1 147 44.2
EL10Ac3g06257 Beta vulgaris HOM05D008455 ORTHO05D009597 1.8e-19 100.9 142 40.8
AUR62033711 Chenopodium quinoa HOM05D008455 ORTHO05D009597 5.2e-19 99.4 143 36.4
AUR62039826 Chenopodium quinoa HOM05D008455 ORTHO05D009597 6.8e-19 99.0 142 36.6
EL10As3g23351 Beta vulgaris HOM05D008455 ORTHO05D009597 1.2e-18 98.2 142 38.7
Ah.01g006000 Amaranthus hybridus HOM05D008455 ORTHO05D009597 2.0e-18 97.4 139 38.1
EL10Ac6g13954 Beta vulgaris HOM05D008455 ORTHO05D009597 2.6e-18 97.1 139 39.6
AUR62037081 Chenopodium quinoa HOM05D008455 ORTHO05D009597 9.8e-18 95.1 143 34.3
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-17 94.4 138 39.9
AUR62037410 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.7e-17 94.4 143 35.0
AUR62037441 Chenopodium quinoa HOM05D008455 ORTHO05D009597 2.9e-17 93.6 143 35.0
Hund01459 Selenicereus undatus HOM05D008455 ORTHO05D009597 3.7e-17 93.2 153 34.0
AUR62039352 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.1e-16 91.7 143 33.6
AUR62039309 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.4e-16 91.3 144 35.4
AUR62034408 Chenopodium quinoa HOM05D008455 ORTHO05D009597 4.6e-15 86.3 139 33.1
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 5.9e-15 85.9 142 36.6
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 2.3e-14 84.0 142 35.9
Nitab4.5_0006731g0050 Nicotiana tabacum HOM05D013259 ORTHO05D009597 2.3e-14 84.0 46 87.0
AUR62039170 Chenopodium quinoa HOM05D008455 ORTHO05D009597 3.9e-14 83.2 177 29.4
CAN.G215.7 Capsicum annuum HOM05D009290 ORTHO05D013052 1.1e-13 81.6 55 69.1
Manes.05G149301 Manihot esculenta HOM05D013259 ORTHO05D009597 4.3e-13 79.7 54 61.1
Manes.12G086248 Manihot esculenta HOM05D009290 ORTHO05D009597 4.3e-13 79.7 145 31.0
Manes.16G080850 Manihot esculenta HOM05D009290 ORTHO05D009597 4.3e-13 79.7 145 31.7
AUR62037959 Chenopodium quinoa HOM05D000107 ORTHO05D009597 7.3e-13 79.0 256 24.6
AUR62041429 Chenopodium quinoa HOM05D000107 ORTHO05D000062 7.3e-13 79.0 228 28.9
Manes.05G186752 Manihot esculenta HOM05D013259 ORTHO05D009597 9.5e-13 78.6 54 59.3
Manes.18G114301 Manihot esculenta HOM05D009290 ORTHO05D009597 9.5e-13 78.6 145 31.7
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.2e-12 78.2 152 32.9
Manes.07G063157 Manihot esculenta HOM05D009290 ORTHO05D009597 1.2e-12 78.2 145 31.7
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.6e-12 77.8 152 31.6
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.1e-12 77.4 229 27.1
AUR62042311 Chenopodium quinoa HOM05D008455 ORTHO05D009597 2.8e-12 77.0 118 36.4
Manes.13G093532 Manihot esculenta HOM05D013259 ORTHO05D009597 2.8e-12 77.0 54 57.4
Manes.08G078911 Manihot esculenta HOM05D013259 ORTHO05D009597 3.6e-12 76.6 54 55.6
AUR62033683 Chenopodium quinoa HOM05D008455 ORTHO05D009597 4.7e-12 76.3 113 35.4
Manes.12G085832 Manihot esculenta HOM05D013259 ORTHO05D009597 6.2e-12 75.9 54 57.4
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 8.0e-12 75.5 141 32.6
AUR62037945 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.8e-11 74.3 180 27.2
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.1e-11 73.6 152 30.9
Nitab4.5_0000737g0090 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.1e-11 73.6 45 82.2
Manes.16G058250 Manihot esculenta HOM05D013259 ORTHO05D009597 6.8e-11 72.4 49 57.1
AUR62031247 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.5e-10 71.2 111 37.8
AUR62043094 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.5e-10 71.2 107 34.6
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.0e-10 70.9 143 32.2
Hund08237 Selenicereus undatus HOM05D008455 ORTHO05D009597 2.6e-10 70.5 113 35.4
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 3.4e-10 70.1 151 31.8
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 4.4e-10 69.7 143 32.2
Dinv04435 Davidia involucrata HOM05D001309 ORTHO05D013539 5.8e-10 69.3 101 35.6
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 9.8e-10 68.6 148 33.1
Manes.15G180436 Manihot esculenta HOM05D009290 ORTHO05D009597 9.8e-10 68.6 68 47.1
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 1.3e-09 68.2 153 31.4
Manes.08G028050 Manihot esculenta HOM05D009290 ORTHO05D009597 1.7e-09 67.8 47 59.6
Manes.11G040473 Manihot esculenta HOM05D009290 ORTHO05D009597 1.7e-09 67.8 47 59.6
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 1.7e-09 67.8 239 26.8
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-09 67.0 123 34.1
Manes.08G084511 Manihot esculenta HOM05D009290 ORTHO05D009597 3.7e-09 66.6 47 59.6
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 4.9e-09 66.2 200 29.5
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.4e-09 65.9 123 33.3
AUR62033793 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.9e-08 64.3 107 32.7
ECA233G0549 Erigeron canadensis HOM05D008488 ORTHO05D000385 2.4e-08 63.9 220 28.6
Manes.06G160267 Manihot esculenta HOM05D009290 ORTHO05D009597 2.4e-08 63.9 47 59.6
Nitab4.5_0004210g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.4e-08 63.9 263 27.4
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.1e-08 63.2 148 29.7
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 5.4e-08 62.8 142 28.9
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.0e-08 62.4 152 30.3
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.0e-08 62.4 141 31.2
COL.COLO4_09996 Corchorus olitorius HOM05D011604 ORTHO05D012513 9.2e-08 62.0 143 30.8
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.2e-07 61.6 135 31.1
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 1.6e-07 61.2 141 35.5
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 2.7e-07 60.5 230 27.4
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.7e-07 60.5 126 34.1
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.7e-07 60.5 146 30.8
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 3.5e-07 60.1 117 35.0
ECA127G0002 Erigeron canadensis HOM05D008488 ORTHO05D000385 3.5e-07 60.1 161 32.9
ECA246G0609 Erigeron canadensis HOM05D008488 ORTHO05D000385 4.6e-07 59.7 141 35.5
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 4.6e-07 59.7 142 28.2
HanXRQChr09g0254541 Helianthus annuus HOM05D008488 ORTHO05D000385 4.6e-07 59.7 133 33.8
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 4.6e-07 59.7 147 31.3
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.6e-07 59.7 117 34.2
Hund20382 Selenicereus undatus HOM05D008455 ORTHO05D009597 6.0e-07 59.3 71 35.2
TWI34G0971 Tripterygium wilfordii HOM05D008309 ORTHO05D010308 6.0e-07 59.3 122 33.6
EL10Ac7g17382 Beta vulgaris HOM05D008455 ORTHO05D009597 7.8e-07 58.9 92 39.1
AUR62039354 Chenopodium quinoa HOM05D008455 ORTHO05D009597 7.8e-07 58.9 103 34.0
AUR62040758 Chenopodium quinoa HOM05D006468 ORTHO05D006908 7.8e-07 58.9 113 37.2
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 7.8e-07 58.9 127 34.6
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 7.8e-07 58.9 140 31.4
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.8e-07 58.9 104 32.7
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-06 58.5 126 33.3
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 1.7e-06 57.8 102 36.3
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.7e-06 57.8 122 30.3
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.3e-06 57.4 169 29.0
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.3e-06 57.4 190 28.9
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 2.3e-06 57.4 142 27.5
TAR625G0459 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.3e-06 57.4 138 28.3
ECA234G0887 Erigeron canadensis HOM05D008488 ORTHO05D000385 3.0e-06 57.0 114 36.0
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 3.0e-06 57.0 137 32.1
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.0e-06 57.0 123 33.3
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 3.9e-06 56.6 102 34.3
TPR.G25563 Trifolium pratense HOM05D000107 ORTHO05D000062 3.9e-06 56.6 226 26.5
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 5.0e-06 56.2 102 35.3
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.0e-06 56.2 150 29.3
AUR62040122 Chenopodium quinoa HOM05D008455 ORTHO05D009597 5.0e-06 56.2 71 32.4
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 5.0e-06 56.2 145 31.0
MBI15_g14066_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.6e-06 55.8 116 34.5
Hund04004 Selenicereus undatus HOM05D008455 ORTHO05D009597 6.6e-06 55.8 95 33.7


User provided reference genes

Program Settings