Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-109 399.8 204 100.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 3.4e-99 365.2 206 90.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.4e-99 364.8 206 90.3
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 7.5e-99 364.0 206 90.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.5e-96 355.1 206 88.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-95 352.8 188 96.8
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.5e-94 347.1 206 84.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.6e-93 346.3 206 85.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.1e-92 342.0 203 85.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.2e-92 341.3 206 85.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.1e-87 324.7 203 79.8
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-86 323.6 203 79.3
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.9e-86 322.8 204 79.4
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.2e-85 320.1 203 78.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.6e-85 319.7 204 79.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.7e-85 318.2 204 77.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 4.7e-85 318.2 204 78.9
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-84 317.0 201 79.6
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.9e-84 313.9 200 78.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.0e-83 312.8 204 76.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.6e-83 312.4 191 84.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.7e-82 309.7 204 77.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.7e-82 309.7 204 75.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.9e-82 308.9 201 77.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.1e-81 307.0 201 76.6
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.4e-81 306.6 205 76.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.9e-81 306.2 203 75.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 7.1e-81 304.3 207 72.5
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.1e-80 302.8 200 75.0
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-80 302.8 204 74.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.1e-80 302.8 209 74.6
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.1e-80 302.8 204 74.5
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.6e-80 301.6 204 74.5
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 4.6e-80 301.6 204 74.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 6.0e-80 301.2 205 75.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 6.0e-80 301.2 206 74.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 7.8e-80 300.8 204 73.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-79 300.4 204 74.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-79 300.4 204 74.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.0e-79 300.4 204 74.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-79 300.1 205 73.7
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.3e-79 300.1 204 74.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.9e-79 298.5 204 73.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.9e-79 298.5 195 77.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 8.6e-79 297.4 202 74.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.9e-78 296.2 207 74.4
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.3e-78 295.0 207 75.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 4.3e-78 295.0 204 72.1
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.3e-78 295.0 205 73.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 9.6e-78 293.9 204 71.6
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.2e-77 293.5 200 73.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.2e-77 293.5 200 74.5
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.2e-77 293.5 187 79.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.2e-77 293.5 204 73.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.2e-77 293.5 200 74.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.6e-77 293.1 204 73.5
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-77 292.0 200 73.0
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 3.6e-77 292.0 204 72.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 4.7e-77 291.6 205 71.7
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.2e-77 291.2 200 73.0
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 8.1e-77 290.8 191 76.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 8.1e-77 290.8 208 72.6
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.1e-76 290.4 200 73.0
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.4e-76 289.3 200 72.5
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.1e-76 288.9 199 72.9
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.0e-76 288.5 205 72.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 4.0e-76 288.5 204 71.6
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.0e-76 288.5 204 70.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.0e-76 288.5 200 73.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.2e-76 288.1 204 70.1
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.9e-76 287.3 201 74.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.0e-75 286.2 200 72.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-75 286.2 200 72.0
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-75 286.2 200 72.0
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-75 286.2 200 72.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.6e-75 285.8 222 67.1
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 4.4e-75 285.0 200 71.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 5.8e-75 284.6 205 69.3
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.6e-75 284.3 190 75.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.9e-75 283.9 201 72.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.7e-74 283.1 190 75.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-74 282.7 204 69.1
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.8e-74 282.0 200 72.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.8e-74 282.0 200 72.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.9e-74 281.6 203 70.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 6.4e-74 281.2 204 69.6
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-73 280.0 206 70.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-73 279.6 192 74.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.6e-72 276.6 210 67.1
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.5e-72 275.4 206 68.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 7.8e-72 274.2 206 68.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.6e-71 271.2 177 74.6
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.7e-71 270.8 207 65.7
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.3e-70 268.5 305 52.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.3e-70 268.5 204 65.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.6e-69 266.5 207 64.7
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.6e-69 266.5 207 68.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.1e-69 266.2 204 64.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-69 266.2 192 69.8
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.1e-69 266.2 207 67.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.8e-69 265.8 202 70.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-69 265.4 204 64.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-69 265.4 204 64.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.6e-69 265.4 204 64.2
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 6.2e-69 264.6 205 65.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.1e-68 263.8 204 63.7
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-68 263.1 193 69.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.8e-68 263.1 204 64.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.8e-68 263.1 204 63.7
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.4e-68 262.7 204 63.7
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 3.1e-68 262.3 191 71.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.1e-68 262.3 206 63.6
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.1e-68 262.3 204 63.2
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.1e-68 262.3 205 64.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.3e-68 261.5 204 63.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.5e-67 260.0 204 63.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.6e-67 259.2 199 66.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.8e-67 258.1 204 63.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 7.6e-67 257.7 200 64.0
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 9.9e-67 257.3 207 63.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-66 256.9 204 63.7
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-66 256.9 261 56.7
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.7e-66 256.5 204 63.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.2e-66 256.1 202 64.4
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.2e-66 256.1 202 64.4
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.2e-66 256.1 202 64.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.4e-66 254.6 204 62.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-65 253.8 189 69.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-65 253.1 200 64.0
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.4e-65 252.7 267 54.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.1e-65 251.1 203 64.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.0e-63 247.3 152 78.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-60 236.5 190 64.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.1e-60 235.7 136 83.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.6e-59 232.6 147 74.8
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 7.6e-59 231.1 177 64.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 9.9e-59 230.7 207 58.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.4e-57 226.1 194 62.4
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.9e-55 218.8 205 58.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.9e-55 218.8 194 57.7
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.0e-50 204.1 195 58.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-50 203.8 167 62.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.9e-50 201.8 174 60.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.5e-50 201.4 190 56.8
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.4e-50 201.1 167 61.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.9e-49 199.9 198 54.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.5e-43 180.3 121 71.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.7e-42 176.8 219 49.3
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.2e-40 170.6 117 72.6
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 9.7e-38 161.0 229 44.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.2e-37 157.9 115 69.6
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.2e-33 146.0 176 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 6.7e-31 138.3 201 40.8
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.8e-28 130.2 69 91.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 7.7e-27 124.8 87 66.7
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.9e-26 122.9 95 62.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-20 104.0 85 64.7
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.0e-18 97.8 79 63.3
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.3e-18 97.4 79 68.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 6.5e-18 95.1 110 40.0
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.2e-17 92.4 76 68.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 6.1e-16 88.6 90 45.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-15 87.0 76 64.5
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.2e-15 85.5 86 54.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.0e-12 75.1 81 50.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-11 74.3 86 53.5
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.6e-11 73.9 67 61.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.9e-11 72.0 60 65.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.2e-09 65.9 106 36.8


User provided reference genes

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