Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 1.4e-82 310.1 220 100.0
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 1.1e-60 237.3 222 78.8
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 6.5e-56 221.5 222 81.1
Sopen02g036670 Solanum pennellii HOM05D016759 ORTHO05D000169 2.5e-55 219.5 220 80.5
Solyc02g092090.3 Solanum lycopersicum HOM05D016759 ORTHO05D000169 1.2e-54 217.2 220 80.0
CAN.G1343.5 Capsicum annuum HOM05D016759 ORTHO05D000169 4.1e-42 175.6 229 71.6
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 5.4e-26 122.1 224 42.4
Peaxi162Scf00548g00014 Petunia axillaris HOM05D000754 ORTHO05D000169 7.8e-25 118.2 178 66.9
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 2.3e-24 116.7 227 37.0
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 2.9e-24 116.3 204 45.1
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 1.1e-23 114.4 221 43.9
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 4.7e-22 109.0 219 36.1
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 1.0e-21 107.8 267 41.2
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 5.2e-21 105.5 214 35.5
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 2.0e-20 103.6 261 35.2
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.3e-19 100.9 265 42.3
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 2.2e-19 100.1 261 35.2
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 4.9e-19 99.0 205 33.7
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 3.2e-18 96.3 223 36.8
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 5.4e-18 95.5 222 36.5
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.2e-17 94.4 224 33.9
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 4.6e-17 92.4 223 34.5
PGSC0003DMG400021433 Solanum tuberosum HOM05D016759 ORTHO05D000169 7.8e-17 91.7 76 68.4
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.3e-16 90.9 211 44.5
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 1.7e-16 90.5 226 34.1
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 3.0e-16 89.7 211 44.1
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 1.1e-15 87.8 221 32.6
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 4.3e-15 85.9 231 34.6
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 7.3e-15 85.1 223 33.2
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 9.5e-15 84.7 203 32.5
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 1.2e-14 84.3 214 31.3
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 1.6e-14 84.0 210 32.4
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 2.1e-14 83.6 215 33.5
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.1e-14 83.6 215 33.5
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.8e-14 83.2 223 32.7
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.8e-14 83.2 72 55.6
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 3.6e-14 82.8 213 36.2
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 3.6e-14 82.8 214 34.6
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 8.0e-14 81.6 184 48.4
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 1.0e-13 81.3 214 31.8
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.8e-13 80.5 72 54.2
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 1.8e-13 80.5 228 32.5
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 2.3e-13 80.1 214 33.6
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.3e-13 80.1 215 32.6
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 2.3e-13 80.1 76 53.9
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 2.3e-13 80.1 213 30.5
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 3.1e-13 79.7 216 31.5
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 5.2e-13 79.0 216 31.5
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 6.8e-13 78.6 223 32.3
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 8.9e-13 78.2 205 32.7
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.2e-12 77.8 72 54.2
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 1.5e-12 77.4 202 33.2
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.6e-12 76.6 215 31.6
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 3.4e-12 76.3 212 29.7
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.4e-12 76.3 72 50.0
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 3.4e-12 76.3 72 50.0
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 4.4e-12 75.9 208 43.3
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 4.4e-12 75.9 237 41.4
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 5.8e-12 75.5 70 55.7
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 3.7e-11 72.8 220 30.9
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 4.9e-11 72.4 193 30.6
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 1.4e-10 70.9 71 50.7
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 1.9e-10 70.5 213 41.8
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 3.2e-10 69.7 229 30.6
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.2e-10 69.7 196 30.1
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 5.4e-10 68.9 221 34.4
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 5.4e-10 68.9 217 25.8
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 7.0e-10 68.6 195 31.8
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 7.0e-10 68.6 214 29.4
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 7.0e-10 68.6 80 46.2
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 7.0e-10 68.6 221 32.1
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 1.2e-09 67.8 63 50.8
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 1.6e-09 67.4 62 50.0
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 1.6e-09 67.4 70 48.6
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 2.0e-09 67.0 199 29.1
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 2.0e-09 67.0 218 36.2
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 2.0e-09 67.0 198 29.8
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 2.7e-09 66.6 73 49.3
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 7.8e-09 65.1 80 43.8
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.0e-08 64.7 80 42.5
C02p64350 Brassica napus HOM05D000754 ORTHO05D000169 1.3e-08 64.3 71 40.8
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 1.3e-08 64.3 195 31.8
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 1.7e-08 63.9 212 29.2
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 2.3e-08 63.5 71 39.4
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 2.3e-08 63.5 71 39.4
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 3.0e-08 63.2 200 29.0
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 3.0e-08 63.2 192 29.7
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 3.9e-08 62.8 60 56.7
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 3.9e-08 62.8 231 35.1
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 3.9e-08 62.8 220 27.3
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 3.9e-08 62.8 71 49.3
BcaC03g18357 Brassica carinata HOM05D000754 ORTHO05D000169 5.0e-08 62.4 71 39.4
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 5.0e-08 62.4 71 39.4
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 8.6e-08 61.6 60 53.3
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 1.5e-07 60.8 193 27.5
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 1.9e-07 60.5 70 45.7
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-07 60.5 71 38.0
Sopen02g036690 Solanum pennellii HOM05D016759 ORTHO05D000169 1.9e-07 60.5 76 56.6
unitig_52.g17604 Utricularia gibba HOM05D000754 ORTHO05D000169 3.3e-07 59.7 72 47.2
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 4.3e-07 59.3 60 53.3
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 5.6e-07 58.9 71 38.0
BcaB02g09902 Brassica carinata HOM05D000754 ORTHO05D000169 5.6e-07 58.9 69 40.6
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 5.6e-07 58.9 71 46.5
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 5.6e-07 58.9 190 31.6
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 5.6e-07 58.9 71 45.1
HanXRQChr09g0255311 Helianthus annuus HOM05D000754 ORTHO05D000169 9.5e-07 58.2 71 40.8
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 1.2e-06 57.8 71 45.1
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 1.2e-06 57.8 59 50.8
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 1.6e-06 57.4 221 28.5
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 1.6e-06 57.4 71 45.1
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 1.6e-06 57.4 71 45.1
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 1.6e-06 57.4 212 26.4
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 1.6e-06 57.4 68 45.6
Dinv23041 Davidia involucrata HOM05D000754 ORTHO05D000169 2.1e-06 57.0 152 30.9
HPP92_007710 Vanilla planifolia HOM05D000754 ORTHO05D000169 2.8e-06 56.6 62 50.0
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 3.6e-06 56.2 71 45.1
SalBow2G1956 Salvia bowleyana HOM05D000754 ORTHO05D000169 3.6e-06 56.2 57 49.1
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 3.6e-06 56.2 76 42.1
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 4.7e-06 55.8 60 50.0
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 4.7e-06 55.8 71 36.6
MSTRG.2807 Avicennia marina HOM05D000754 ORTHO05D000169 4.7e-06 55.8 186 26.3
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 4.7e-06 55.8 81 43.2
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 6.2e-06 55.5 75 38.7
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 8.1e-06 55.1 212 37.7
Thhalv10005352m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 8.1e-06 55.1 67 37.3
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 8.1e-06 55.1 195 26.7


User provided reference genes

Program Settings