Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.5e-184 648.7 329 100.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.9e-176 622.5 330 96.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.9e-175 617.1 329 94.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.7e-173 610.9 329 93.0
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 5.7e-173 610.9 329 93.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 7.7e-170 600.5 329 93.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.9e-152 542.7 330 85.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.7e-148 529.6 329 80.2
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.8e-142 509.6 324 78.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.0e-142 508.8 329 76.9
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.0e-141 506.1 329 74.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.4e-141 505.4 323 78.6
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.3e-140 503.4 329 76.0
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.8e-139 499.6 329 77.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.4e-139 498.0 328 73.8
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 7.0e-139 497.7 325 76.9
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.0e-139 497.7 328 75.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.5e-138 495.4 329 74.2
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.3e-137 493.4 330 73.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.3e-137 492.7 328 74.4
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 5.0e-137 491.5 328 73.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.5e-136 490.0 331 74.6
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-135 486.1 325 71.4
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.6e-135 485.3 329 71.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 8.0e-135 484.2 329 72.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.1e-134 483.8 324 71.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.4e-134 483.4 328 72.0
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.8e-134 483.0 328 73.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.3e-134 482.6 324 72.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.3e-134 482.6 329 73.3
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.1e-134 482.3 329 72.3
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 6.8e-134 481.1 326 72.1
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.5e-133 479.9 326 72.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.0e-133 479.6 331 73.4
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 5.8e-133 478.0 329 72.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-132 475.7 325 69.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.4e-131 472.6 325 69.2
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-130 469.5 325 68.9
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.7e-130 469.2 328 70.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.5e-130 468.8 325 69.2
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.5e-130 468.8 331 71.3
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 3.5e-130 468.8 326 70.9
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.7e-129 466.5 329 70.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.3e-129 466.1 331 70.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.3e-129 466.1 331 70.1
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.0e-129 465.7 325 69.5
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 5.0e-129 464.9 326 71.2
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.1e-128 463.8 329 70.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.5e-128 463.4 325 69.8
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.5e-128 463.4 336 69.3
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 2.5e-128 462.6 326 72.4
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.3e-128 462.2 331 69.5
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 4.3e-128 461.8 326 70.2
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 7.3e-128 461.1 323 69.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.2e-127 460.3 330 67.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.8e-127 459.1 326 69.3
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.8e-127 459.1 324 68.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 4.7e-127 458.4 331 70.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.1e-127 457.6 322 69.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-126 457.2 331 68.9
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.3e-126 456.1 322 69.9
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.3e-126 456.1 329 69.6
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.1e-126 455.7 322 68.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.2e-125 453.8 327 67.9
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-125 453.8 325 69.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-125 453.4 326 69.3
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.5e-125 453.4 326 68.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.5e-125 453.4 329 68.4
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.4e-125 451.8 324 67.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 9.9e-125 450.7 329 68.1
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.7e-124 449.9 326 68.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.1e-123 447.2 324 67.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 323 68.4
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 9.2e-123 444.1 323 68.1
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-122 443.7 373 61.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.5e-122 442.2 329 66.9
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 66.2
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.3e-121 439.5 326 66.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.9e-121 438.7 327 68.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.3e-120 435.6 325 64.9
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.5e-117 426.8 326 65.0
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.4e-117 425.6 326 64.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.8e-117 424.9 326 66.3
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 7.6e-117 424.5 326 64.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.3e-116 423.7 326 65.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.2e-116 422.9 311 67.2
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.2e-116 422.9 320 65.6
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.2e-116 422.9 328 64.9
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.8e-116 422.2 324 65.1
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 8.4e-116 421.0 324 64.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.4e-115 419.5 419 56.8
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 4.1e-115 418.7 326 63.8
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 9.2e-115 417.5 328 64.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.2e-114 417.2 326 63.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.6e-114 416.8 309 67.3
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.6e-114 416.8 326 63.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 7.8e-114 414.5 326 63.8
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.2e-111 407.1 325 63.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.6e-111 405.6 307 64.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.6e-111 405.6 281 72.2
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 3.1e-110 402.5 296 67.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.0e-110 402.1 378 57.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 5.2e-110 401.7 325 61.5
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 9.0e-110 401.0 325 61.5
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 9.9e-109 397.5 325 61.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 9.9e-109 397.5 324 61.4
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.8e-108 395.6 326 61.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 6.4e-108 394.8 547 43.1
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 8.7e-105 384.4 268 71.3
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.5e-104 383.6 292 64.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-102 377.5 324 59.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.4e-102 376.3 256 72.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 5.8e-101 371.7 325 59.4
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.9e-101 370.9 326 59.8
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.8e-100 369.0 326 58.6
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-98 364.0 325 57.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.0e-93 346.7 328 56.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.9e-92 342.8 687 34.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 5.5e-91 338.6 291 60.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.8e-86 323.6 271 61.3
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-85 320.5 267 61.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.5e-85 318.9 224 72.3
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.0e-84 317.8 230 66.1
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 9.3e-83 311.2 312 50.6
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.9e-81 305.8 310 47.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.9e-81 305.8 310 48.4
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 7.4e-80 301.6 258 60.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.1e-78 296.2 202 71.8
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.6e-74 282.3 310 47.1
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.4e-70 270.8 179 76.0
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.7e-68 263.8 223 59.2
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.6e-53 213.4 305 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 7.5e-40 168.7 193 43.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.6e-34 151.0 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-33 146.7 96 74.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 4.5e-29 132.9 119 58.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 4.5e-29 132.9 96 69.8
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.8e-28 129.8 86 72.1
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 8.6e-28 128.6 84 79.8
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.3e-27 126.7 75 76.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-26 123.6 97 62.9
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.0e-26 122.1 97 62.9
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.1e-18 97.4 330 26.1
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.9e-15 87.0 85 51.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 7.0e-14 82.4 69 59.4
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.6e-10 70.1 54 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 6.2e-10 69.3 69 53.6
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.1e-09 67.0 56 57.1
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.9e-09 65.5 43 69.8


User provided reference genes

Program Settings