Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 8.4e-172 607.1 338 100.0
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 7.0e-134 481.1 339 81.7
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 7.8e-117 424.5 342 70.8
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 8.6e-100 367.9 345 64.3
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.0e-96 356.7 373 59.5
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.9e-95 352.8 339 64.3
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.7e-93 346.3 340 63.2
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.6e-69 265.8 349 49.9
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.8e-55 219.5 337 45.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 9.3e-54 214.9 338 43.2
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.3e-52 211.1 336 43.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.5e-51 206.8 333 40.8
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.2e-48 198.0 286 46.9
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 3.4e-48 196.4 364 40.1
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 3.8e-47 193.0 375 36.8
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 2.3e-44 183.7 337 38.0
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 9.7e-43 178.3 282 43.6
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.2e-40 171.4 240 45.4
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.2e-40 171.4 338 37.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.2e-40 171.4 336 37.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 2.6e-40 170.2 142 59.2
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 4.5e-40 169.5 344 36.0
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.7e-39 167.5 376 34.0
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 2.2e-39 167.2 142 57.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.9e-39 166.8 343 36.7
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 8.5e-39 165.2 418 34.0
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.5e-38 163.7 418 33.7
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.5e-38 163.7 187 47.6
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.2e-38 163.3 338 36.1
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.6e-37 159.8 335 33.1
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 4.7e-37 159.5 332 38.6
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.0e-36 158.3 143 57.3
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 6.7e-36 155.6 304 36.8
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 8.8e-36 155.2 226 42.9
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 3.3e-35 153.3 330 39.1
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 3.3e-35 153.3 332 35.8
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 4.4e-35 152.9 170 48.8
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 5.7e-35 152.5 170 48.8
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 5.7e-35 152.5 364 33.8
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.7e-35 152.5 372 32.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 7.4e-35 152.1 454 31.5
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.3e-34 151.4 165 51.5
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.7e-34 151.0 349 34.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.2e-34 150.6 332 36.1
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.2e-34 150.6 314 37.9
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 8.2e-34 148.7 332 36.4
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 3.1e-33 146.7 426 31.7
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 3.1e-33 146.7 163 49.1
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 4.1e-33 146.4 152 53.9
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 5.3e-33 146.0 348 33.9
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 5.3e-33 146.0 287 34.8
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 9.1e-33 145.2 142 52.8
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.6e-32 144.4 153 52.3
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.6e-32 143.7 186 41.4
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 3.5e-32 143.3 297 36.4
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.9e-32 142.5 146 52.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 5.9e-32 142.5 145 55.2
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.0e-31 141.7 312 37.2
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.7e-31 141.0 141 50.4
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.2e-31 140.6 140 52.9
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.2e-31 140.6 141 51.8
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.2e-31 140.6 143 54.5
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 2.9e-31 140.2 142 51.4
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 3.8e-31 139.8 142 51.4
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.0e-31 139.4 138 52.2
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.0e-31 139.4 332 34.6
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 6.5e-31 139.0 228 40.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 6.5e-31 139.0 258 39.1
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 8.5e-31 138.7 142 50.7
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.5e-31 138.7 361 31.6
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.9e-30 137.5 142 50.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.9e-30 137.5 315 35.9
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.9e-30 137.5 317 35.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-30 136.7 133 54.1
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 4.2e-30 136.3 137 52.6
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 4.2e-30 136.3 141 50.4
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.5e-30 136.0 304 34.5
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 5.5e-30 136.0 293 34.8
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 5.5e-30 136.0 142 49.3
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 7.2e-30 135.6 140 50.0
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 7.2e-30 135.6 137 49.6
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.2e-29 134.8 316 35.1
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.2e-29 134.8 131 54.2
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.2e-29 134.8 139 51.8
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.2e-29 134.8 141 49.6
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.6e-29 134.4 406 31.5
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.1e-29 134.0 356 30.3
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.7e-29 133.7 278 37.1
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 3.6e-29 133.3 309 35.0
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.7e-29 132.9 151 50.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 6.1e-29 132.5 150 48.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.0e-29 132.1 345 30.4
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.0e-28 131.7 140 51.4
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.8e-28 131.0 130 52.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.8e-28 131.0 305 37.0
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.8e-28 131.0 339 34.2
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.3e-28 130.6 335 33.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 5.2e-28 129.4 311 34.1
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 8.8e-28 128.6 180 44.4
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 8.8e-28 128.6 163 45.4
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.0e-27 127.5 353 29.7
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.6e-27 127.1 176 43.2
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 6.3e-26 122.5 451 29.3
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 8.2e-26 122.1 180 43.9
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.1e-25 121.7 338 34.9
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.8e-25 120.9 297 36.7
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.1e-25 120.2 154 46.1
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 7.0e-25 119.0 272 32.4
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 9.1e-25 118.6 141 44.7
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.2e-24 118.2 197 37.1
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.7e-23 114.4 140 46.4
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.7e-21 107.1 279 33.3
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 6.1e-21 105.9 339 26.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 1.4e-20 104.8 140 42.9
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.8e-20 102.4 116 46.6
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 3.4e-19 100.1 142 40.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.4e-19 99.8 325 31.1
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 9.8e-19 98.6 142 42.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.7e-18 97.8 310 28.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.8e-18 97.1 374 28.6
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.2e-16 91.7 310 30.3
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.7e-16 90.5 96 50.0
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 8.6e-15 85.5 105 48.6
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.9e-14 84.3 327 29.4
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.8e-12 77.8 129 40.3
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.4e-11 73.6 67 53.7
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 8.3e-10 68.9 66 53.0
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.4e-09 68.2 215 30.7
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 5.4e-09 66.2 92 39.1
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 3.5e-08 63.5 163 28.2
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.3e-07 60.8 254 24.8
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 5.0e-07 59.7 60 51.7
Medtr5g078040 Medicago truncatula HOM05D000136 ORTHO05D000080 1.9e-06 57.8 99 34.3
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.5e-06 57.4 92 38.0
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 5.6e-06 56.2 98 30.6


User provided reference genes

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