Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.9e-281 971.8 496 100.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.8e-239 832.4 515 83.7
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 3.5e-235 818.1 515 81.7
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.0e-234 816.6 509 83.3
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.1e-232 808.9 515 81.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.9e-229 798.5 543 77.9
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.1e-187 659.4 355 94.6
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 8.8e-186 654.1 508 68.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.3e-173 612.8 489 65.0
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 7.3e-172 607.8 499 64.3
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 4.0e-170 602.1 495 63.4
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.9e-168 595.1 510 62.2
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 4.9e-168 595.1 521 60.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.9e-167 593.2 490 63.5
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.0e-166 589.7 496 62.5
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.0e-166 589.7 493 63.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.0e-165 587.4 497 63.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.3e-165 586.3 510 62.0
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.0e-165 585.1 494 63.0
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.5e-164 582.8 495 62.8
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 3.3e-164 582.4 501 62.9
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.2e-163 580.5 496 61.9
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-163 580.5 498 62.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 4.7e-163 578.6 491 62.3
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 8.1e-163 577.8 492 62.0
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.3e-162 576.2 511 61.1
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.9e-162 574.3 490 62.2
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.2e-161 573.9 492 62.2
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.4e-161 572.4 492 61.2
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.7e-160 570.1 489 61.3
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.2e-160 569.7 503 62.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.9e-160 569.3 495 61.4
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-160 568.9 498 61.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.3e-160 567.8 495 60.8
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-159 566.2 490 61.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.4e-159 566.2 495 60.6
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 4.1e-159 565.5 502 62.0
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 2.1e-158 563.1 496 61.3
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.7e-158 562.8 494 60.9
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 6.0e-158 561.6 505 59.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.3e-157 560.5 494 59.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.0e-157 559.3 484 61.2
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 3.0e-157 559.3 486 61.7
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 3.0e-157 559.3 497 60.8
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 8.6e-157 557.8 499 59.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.5e-156 557.0 486 60.9
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 2.5e-156 556.2 496 59.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 3.6e-155 552.4 493 61.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.2e-155 551.6 490 57.3
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 6.2e-155 551.6 490 58.8
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 6.2e-155 551.6 495 58.2
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 8.1e-155 551.2 486 57.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 8.1e-155 551.2 486 57.0
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 8.1e-155 551.2 493 58.8
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 5.2e-154 548.5 496 59.7
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 6.8e-154 548.1 496 59.1
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 8.9e-154 547.7 497 58.1
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 8.9e-154 547.7 497 58.1
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.2e-153 547.4 503 57.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 4.4e-153 545.4 496 57.9
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 5.8e-153 545.0 496 57.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.8e-153 545.0 490 60.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.8e-152 542.3 502 57.6
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.8e-152 542.3 561 56.1
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 4.9e-152 542.0 490 56.5
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 4.9e-152 542.0 496 58.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 3.2e-151 539.3 493 58.4
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.2e-151 539.3 485 59.8
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.2e-151 539.3 486 59.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.0e-149 532.7 501 59.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.1e-149 531.9 492 58.3
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.9e-148 530.0 503 57.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.6e-147 525.8 501 56.9
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.9e-144 516.2 461 59.2
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.4e-143 513.8 444 61.7
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 5.4e-143 511.9 488 56.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 7.8e-142 508.1 488 55.7
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.0e-141 507.7 488 56.4
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.1e-141 505.4 513 57.1
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 3.6e-139 499.2 443 59.8
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.3e-138 495.4 490 55.7
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.5e-137 492.3 441 59.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.3e-136 490.7 450 58.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 6.4e-136 488.4 479 55.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.2e-135 486.1 446 58.3
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 3.2e-135 486.1 435 59.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.7e-134 483.0 490 53.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 3.5e-134 482.6 444 58.3
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.4e-127 459.9 485 53.0
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.1e-124 451.1 485 52.2
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-123 446.8 422 59.0
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 8.2e-123 444.9 393 60.1
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.9e-119 433.7 356 62.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 3.2e-119 433.0 389 59.4
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.3e-116 422.9 482 51.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 3.1e-114 416.4 495 51.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 3.6e-110 402.9 491 48.7
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 4.6e-110 402.5 398 56.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-108 397.9 366 58.2
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.7e-108 394.8 485 49.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 4.1e-106 389.4 505 43.6
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 6.9e-106 388.7 497 45.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.0e-104 384.8 394 53.6
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 5.5e-103 379.0 352 57.4
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 5.1e-101 372.5 362 55.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.7e-99 367.5 591 42.0
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.2e-99 367.1 433 49.4
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-98 364.0 339 59.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 7.9e-94 348.6 395 49.4
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.0e-93 346.7 257 71.6
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.8e-91 340.1 491 43.6
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 8.5e-88 328.6 285 59.3
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.7e-86 323.6 321 52.6
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-82 310.1 370 50.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 4.1e-82 309.7 249 66.7
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 7.0e-82 308.9 299 55.5
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-81 308.1 343 52.8
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 7.2e-79 298.9 232 68.5
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-76 290.8 272 58.1
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.0e-76 290.8 579 37.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.4e-76 290.0 367 44.1
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.7e-75 287.7 236 61.9
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 4.7e-70 269.6 361 46.0
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-66 258.5 247 57.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.2e-62 245.0 188 73.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.5e-60 238.0 225 56.9
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.4e-59 232.6 175 68.6
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-55 221.9 160 68.1
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-55 221.1 370 40.0
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-55 220.7 165 66.1
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-53 213.8 265 49.8
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-52 211.8 217 53.5
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 7.5e-52 209.1 193 55.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-51 207.2 383 38.9
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 3.4e-44 183.7 198 54.5
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.4e-43 179.5 193 52.3
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.1e-42 178.7 212 49.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 2.4e-42 177.6 505 30.7
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.4e-42 176.4 119 83.2
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.4e-34 151.8 145 54.5
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 8.7e-32 142.5 120 61.7
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 3.3e-31 140.6 104 72.1
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-29 134.8 121 59.5
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.0e-29 133.7 608 27.0
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-29 133.3 121 58.7
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-28 131.3 121 58.7
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 7.6e-28 129.4 486 26.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.9e-24 117.1 95 63.2
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 4.3e-23 113.6 155 42.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-19 100.9 64 78.1
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-18 98.2 85 60.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 3.5e-17 94.0 188 38.8
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-16 90.9 125 45.6
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-15 88.6 81 60.5
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-15 87.4 81 56.8
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-14 83.6 78 56.4
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-13 82.4 76 55.3
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-13 81.6 70 50.0
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 5.8e-12 76.6 89 43.8
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 9.3e-10 69.3 54 63.0
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 7.9e-09 66.2 40 77.5
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 5.1e-08 63.5 101 42.6


User provided reference genes

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