Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.8e-59 230.7 120 100.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.9e-57 225.7 120 96.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.5e-46 188.7 118 85.6
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.5e-46 188.7 117 83.8
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.8e-45 185.3 126 77.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.7e-45 184.9 117 82.1
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 4.8e-45 184.5 117 82.9
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.1e-44 183.3 120 77.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.4e-44 183.0 120 75.8
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.4e-44 182.2 120 75.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.3e-44 181.0 127 74.8
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 5.3e-44 181.0 121 80.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.9e-44 180.6 120 77.5
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.0e-43 179.1 126 77.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.0e-43 179.1 124 75.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.0e-43 179.1 124 75.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.0e-43 179.1 126 73.8
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.0e-43 179.1 108 84.3
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.6e-43 178.7 110 81.8
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.6e-43 178.7 125 77.6
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.6e-43 178.7 125 77.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.6e-43 178.7 126 77.0
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 3.4e-43 178.3 125 76.0
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 7.7e-43 177.2 124 77.4
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.7e-42 176.0 108 76.9
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.2e-42 175.6 130 73.1
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.8e-42 174.9 104 83.7
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.0e-42 174.5 122 76.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 6.5e-42 174.1 121 74.4
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.5e-42 174.1 108 79.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 8.5e-42 173.7 125 76.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 8.5e-42 173.7 121 74.4
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.1e-41 173.3 126 73.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-41 173.3 110 81.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.4e-41 172.9 116 79.3
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.9e-41 172.6 119 73.9
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.9e-41 172.6 127 73.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.9e-41 172.6 126 73.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.9e-41 172.6 103 83.5
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.5e-41 172.2 126 70.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.5e-41 172.2 107 80.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.5e-41 172.2 126 72.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.2e-41 171.8 126 71.4
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.2e-41 171.8 125 74.4
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 4.2e-41 171.4 130 70.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 4.2e-41 171.4 122 77.9
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 5.5e-41 171.0 109 78.9
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 5.5e-41 171.0 120 76.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 9.4e-41 170.2 131 68.7
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.4e-41 170.2 107 82.2
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.4e-41 170.2 107 82.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 9.4e-41 170.2 107 82.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 9.4e-41 170.2 125 74.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.4e-41 170.2 101 85.1
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.1e-40 169.1 127 70.9
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.7e-40 168.7 110 77.3
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.7e-40 168.7 123 74.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.6e-40 168.3 123 72.4
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.6e-40 168.3 120 75.0
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.1e-40 167.5 121 71.1
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.1e-40 167.5 103 83.5
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 6.1e-40 167.5 126 73.8
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.0e-39 166.8 107 77.6
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.0e-39 166.8 125 72.8
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.0e-39 166.8 126 73.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-39 166.8 126 73.8
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-39 166.0 124 72.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.0e-39 165.2 122 72.1
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.9e-39 164.9 114 76.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 3.9e-39 164.9 128 71.1
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.9e-39 164.9 121 72.7
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.9e-39 164.9 121 72.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 5.1e-39 164.5 118 71.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-39 164.1 124 73.4
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.8e-39 163.7 105 80.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-38 163.3 126 69.0
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.5e-38 162.9 123 73.2
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.0e-38 162.5 126 69.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.6e-38 162.2 111 76.6
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.6e-38 162.2 126 69.0
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.6e-38 162.2 126 67.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.6e-38 162.2 122 71.3
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.6e-38 162.2 121 71.1
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.3e-38 161.8 111 77.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 3.3e-38 161.8 111 76.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 3.3e-38 161.8 108 80.6
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.3e-38 161.8 110 77.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.3e-38 161.8 110 78.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.3e-38 161.8 124 72.6
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.4e-38 161.4 126 71.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 4.4e-38 161.4 111 75.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 5.7e-38 161.0 108 76.9
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.7e-38 161.0 111 76.6
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 5.7e-38 161.0 123 69.9
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 5.7e-38 161.0 123 69.9
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.7e-38 161.0 112 76.8
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.7e-38 161.0 112 76.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 5.7e-38 161.0 96 81.2
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 5.7e-38 161.0 111 75.7
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.4e-38 160.6 106 80.2
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.4e-38 160.6 129 69.0
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 9.7e-38 160.2 110 75.5
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.7e-38 160.2 122 71.3
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.7e-38 160.2 109 77.1
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.7e-38 160.2 110 78.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.3e-37 159.8 121 71.1
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.3e-37 159.8 124 70.2
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.3e-37 159.8 112 76.8
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.3e-37 159.8 112 76.8
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.3e-37 159.8 107 76.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.7e-37 159.5 109 76.1
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.8e-37 158.7 119 70.6
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.7e-37 158.3 128 69.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.7e-37 158.3 96 80.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 4.8e-37 157.9 119 74.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 6.3e-37 157.5 124 69.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.2e-37 157.1 106 77.4
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.8e-36 156.0 111 70.3
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 4.1e-36 154.8 109 70.6
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 4.1e-36 154.8 117 73.5
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 7.0e-36 154.1 111 73.0
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 7.0e-36 154.1 111 73.0
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 7.0e-36 154.1 111 73.0
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 7.0e-36 154.1 119 71.4
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.0e-36 154.1 104 74.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.0e-34 150.2 110 73.6
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.2e-34 149.1 125 67.2
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 6.5e-34 147.5 124 66.1
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 8.5e-34 147.1 109 69.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-33 146.7 104 71.2
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 5.5e-33 144.4 87 82.8
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 7.2e-33 144.1 87 80.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.4e-33 143.7 106 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.0e-31 140.2 108 64.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.4e-30 134.0 75 85.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.7e-29 131.7 83 78.3
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.1e-28 130.2 87 75.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.2e-26 122.5 105 62.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-25 119.8 73 82.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.9e-25 119.4 76 82.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 6.7e-23 110.9 116 59.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.5e-22 109.8 131 51.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.3e-22 108.6 91 60.4
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.7e-22 107.8 74 74.3
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.1e-20 101.7 71 69.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-20 101.3 89 64.0
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.2e-19 100.1 113 55.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.6e-19 99.8 62 80.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.5e-19 98.6 73 68.5
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.5e-19 98.2 88 59.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 3.2e-17 92.0 80 58.8
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-16 89.7 46 97.8
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.0e-15 85.1 53 79.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.8e-13 78.2 65 60.0
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.6e-08 63.2 67 52.2


User provided reference genes

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