Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.2e-149 533.1 270 100.0
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.4e-121 439.1 318 72.3
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 9.6e-118 427.2 321 72.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.8e-117 425.6 321 71.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.2e-117 424.5 222 95.0
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.1e-112 409.5 229 88.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.7e-112 409.1 223 90.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 8.2e-93 344.4 219 75.8
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.1e-92 344.0 220 73.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.5e-91 338.6 235 68.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 5.8e-91 338.2 263 64.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 5.0e-90 335.1 221 73.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.1e-89 334.0 219 72.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.5e-89 332.8 219 69.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.1e-88 328.2 220 70.9
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.8e-87 326.6 231 68.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 2.3e-87 326.2 222 71.6
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 8.7e-87 324.3 218 69.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.1e-86 323.9 226 66.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.1e-86 323.9 229 67.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.5e-86 323.6 237 65.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.5e-86 323.6 240 65.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.3e-86 322.4 219 69.9
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.3e-86 322.0 220 70.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.3e-86 322.0 221 67.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 7.4e-86 321.2 219 70.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.6e-85 320.1 220 67.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.2e-85 319.7 220 67.7
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.8e-85 319.3 219 68.5
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.8e-85 319.3 225 66.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.7e-85 318.9 219 68.5
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 4.8e-85 318.5 222 68.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.4e-84 316.2 220 67.3
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 9.0e-84 314.3 225 65.3
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.2e-83 313.9 231 66.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-83 313.9 215 68.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.5e-83 313.5 224 66.5
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.6e-83 312.8 216 67.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.4e-83 312.4 222 65.8
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 5.9e-83 311.6 222 67.6
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.3e-82 310.5 215 67.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.7e-82 310.1 230 65.2
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.8e-82 308.9 221 66.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 8.5e-82 307.8 224 66.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.5e-82 307.8 218 65.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 8.5e-82 307.8 220 65.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.1e-81 307.4 220 65.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.9e-81 306.6 227 66.1
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.2e-81 305.4 220 63.6
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.2e-81 305.4 221 64.3
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 5.5e-81 305.1 221 65.2
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 7.2e-81 304.7 242 60.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 9.4e-81 304.3 221 64.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.2e-80 303.9 223 66.4
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.6e-80 303.5 220 63.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.6e-80 303.5 256 56.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.7e-80 302.8 221 65.2
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 3.6e-80 302.4 221 64.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 7.9e-80 301.2 258 58.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.0e-79 300.8 220 65.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.4e-79 300.4 219 63.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.8e-79 300.1 223 64.6
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.0e-79 299.3 221 63.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.9e-79 298.9 220 63.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-78 297.4 227 63.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.5e-78 296.2 226 62.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.7e-77 293.5 238 60.5
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.8e-77 292.0 315 50.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.4e-76 289.7 220 63.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 6.9e-76 288.1 229 58.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.5e-75 287.0 217 62.2
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.2e-74 283.1 221 60.6
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.4e-73 280.4 224 58.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.5e-73 279.6 250 55.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.5e-73 279.6 250 56.4
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.6e-72 276.9 227 56.8
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.6e-72 276.9 251 57.0
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-72 276.6 222 60.4
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.7e-72 275.4 248 55.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 6.1e-72 275.0 306 48.0
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 7.9e-72 274.6 287 49.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-71 274.2 248 55.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.4e-71 273.9 219 58.9
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.9e-71 272.3 225 55.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.8e-71 271.2 271 53.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-70 270.0 222 59.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.6e-70 269.6 219 59.4
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.4e-70 268.9 243 55.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 9.7e-70 267.7 222 59.9
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-69 267.3 217 59.0
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-69 266.9 219 58.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.7e-69 265.8 220 60.0
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.8e-69 265.4 225 59.1
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 6.3e-69 265.0 215 59.1
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-68 264.2 223 58.3
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-68 263.8 214 58.9
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-68 263.1 240 55.8
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.4e-68 263.1 225 56.4
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.4e-68 263.1 260 53.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-67 260.8 224 58.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-67 260.8 224 58.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.5e-67 260.4 221 57.0
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-67 260.0 214 58.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.0e-67 260.0 240 53.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-67 259.6 224 58.0
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.6e-67 259.6 224 58.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.6e-67 259.6 224 58.0
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.6e-67 259.6 224 58.0
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.9e-67 258.5 216 59.3
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-66 257.7 224 57.6
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-66 257.7 234 55.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.7e-66 256.9 246 53.7
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.2e-66 256.5 225 54.7
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.9e-66 256.1 251 51.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.5e-66 254.6 213 57.7
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-65 253.4 222 57.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.5e-65 251.9 223 56.1
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-64 248.4 195 61.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.7e-61 239.2 185 62.2
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 3.7e-61 239.2 156 71.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.1e-60 237.7 222 53.2
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 9.1e-60 234.6 158 69.6
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.6e-59 233.8 156 67.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.0e-59 233.4 156 67.9
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.9e-58 229.6 197 57.9
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.8e-55 218.0 217 51.6
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-53 214.2 216 51.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.8e-53 213.0 218 51.4
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 6.3e-53 211.8 202 52.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-52 210.3 202 52.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.4e-52 209.9 213 52.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-52 209.9 202 53.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.4e-52 209.9 202 52.0
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 7.0e-52 208.4 202 52.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.0e-51 206.8 146 65.8
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.2e-50 203.4 202 51.5
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 3.2e-49 199.5 223 49.3
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.1e-48 196.8 211 48.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-46 190.7 139 66.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 7.5e-46 188.3 134 67.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 8.3e-45 184.9 224 46.0
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.3e-45 184.9 203 45.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.5e-43 179.1 126 69.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.8e-40 169.9 143 59.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.1e-40 168.7 232 42.2
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.6e-38 163.3 105 70.5
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-37 161.0 136 55.9
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.6e-35 152.5 234 38.9
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-34 150.2 128 60.9
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 7.3e-33 145.2 163 52.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-32 141.7 141 56.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.3e-31 140.2 166 50.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 2.3e-31 140.2 100 65.0
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.1e-31 139.8 215 39.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.8e-31 138.7 106 62.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.0e-30 137.1 120 60.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.7e-29 134.0 135 49.6
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.7e-29 134.0 180 42.8
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.9e-29 132.5 172 43.0
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.9e-25 120.6 76 73.7
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.6e-25 119.0 251 34.3
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.6e-24 117.5 80 70.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.5e-22 110.9 105 57.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 4.1e-20 102.8 89 52.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 5.1e-18 95.9 84 50.0
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.2e-15 85.9 85 52.9
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.2e-11 74.7 151 33.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.0e-10 70.1 171 32.2
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.0e-10 70.1 179 29.6
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.0e-10 70.1 77 50.6
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 9.6e-09 65.1 188 29.8
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.1e-08 62.0 58 51.7
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 4.0e-07 59.7 128 32.8
HanXRQChr14g0429031 Helianthus annuus HOM05D001860 ORTHO05D223518 3.4e-06 56.6 34 70.6


User provided reference genes

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