Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.3e-151 538.1 299 100.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.8e-141 506.1 334 86.5
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.0e-124 449.5 297 86.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.8e-124 448.0 301 85.4
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.1e-118 429.5 294 83.3
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.2e-113 413.7 388 66.5
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.1e-109 400.6 297 76.8
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 5.5e-106 388.3 295 73.9
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.5e-105 385.6 297 74.1
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 8.7e-104 380.9 294 72.1
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 8.7e-104 380.9 294 71.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.5e-103 379.4 294 72.4
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.3e-102 377.1 294 72.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.6e-102 376.7 294 72.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.1e-102 376.3 295 73.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.7e-102 375.6 281 74.0
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 6.2e-102 374.8 295 72.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 6.2e-102 374.8 294 69.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 8.2e-102 374.4 294 70.4
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.8e-101 373.2 304 69.7
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 6.9e-101 371.3 294 71.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.9e-101 371.3 294 71.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 1.2e-100 370.5 302 71.9
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-100 370.5 294 69.4
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.6e-100 369.4 294 71.1
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 4.5e-100 368.6 295 70.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 7.6e-100 367.9 295 71.5
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.0e-99 367.5 296 70.9
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-98 363.2 296 72.0
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-98 363.2 296 72.0
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.9e-98 363.2 294 70.1
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 4.2e-98 362.1 312 68.3
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 9.3e-98 360.9 294 70.4
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 9.3e-98 360.9 294 70.4
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.6e-97 360.1 294 70.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 4.6e-97 358.6 296 70.6
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.0e-96 357.5 295 68.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.0e-96 357.5 386 58.5
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.5e-95 352.8 301 68.8
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 3.3e-95 352.4 272 73.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 5.7e-95 351.7 293 68.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.3e-94 350.5 263 74.1
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.6e-94 350.1 295 67.5
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.2e-94 349.7 325 63.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.8e-94 349.4 296 69.9
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 4.8e-94 348.6 297 68.7
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 8.2e-94 347.8 359 60.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.8e-93 346.7 293 68.6
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.3e-93 345.1 294 68.0
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.3e-93 345.1 294 68.4
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 9.0e-93 344.4 295 68.5
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.5e-92 343.6 294 67.7
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.0e-92 343.2 296 66.2
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.6e-92 342.8 296 68.6
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 2.6e-92 342.8 294 66.0
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.4e-92 342.4 294 67.7
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 5.9e-92 341.7 296 68.2
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 5.9e-92 341.7 302 67.2
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.0e-91 340.9 294 67.3
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.4e-90 337.0 294 65.3
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.9e-90 336.7 299 67.2
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.9e-90 336.7 301 68.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 5.5e-90 335.1 299 66.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.6e-89 333.6 296 66.2
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.4e-88 330.5 294 65.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.8e-88 330.1 298 64.8
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.8e-88 330.1 297 64.6
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.0e-88 329.3 298 65.1
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.0e-88 329.3 298 65.1
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 5.1e-88 328.6 258 73.3
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.7e-88 328.2 300 65.3
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.1e-87 327.4 300 64.3
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.1e-87 327.4 299 66.9
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.5e-87 327.0 300 65.0
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.5e-87 327.0 300 65.0
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 9.7e-87 324.3 296 65.5
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 9.7e-87 324.3 320 62.8
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-86 323.6 293 64.5
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.2e-86 323.2 299 64.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.4e-85 320.5 295 64.1
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.8e-85 320.1 295 64.1
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 5.3e-85 318.5 294 64.6
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 6.9e-85 318.2 270 67.8
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 9.1e-85 317.8 295 62.7
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.2e-84 317.4 253 70.4
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.2e-84 317.4 255 68.6
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.5e-84 315.5 299 62.5
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 4.5e-84 315.5 310 62.6
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 3.8e-83 312.4 294 64.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 6.5e-83 311.6 294 62.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.9e-82 310.1 303 62.0
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.2e-81 307.4 293 61.4
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.6e-81 307.0 293 61.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 3.0e-80 302.8 297 60.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 5.1e-80 302.0 298 62.8
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 6.7e-80 301.6 294 61.6
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 8.8e-80 301.2 221 76.5
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.1e-79 300.8 263 66.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.4e-79 298.1 255 65.9
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 6.3e-78 295.0 375 52.5
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 8.2e-78 294.7 213 75.6
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.3e-77 292.0 297 59.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 5.3e-77 292.0 175 92.6
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 3.5e-76 289.3 287 60.3
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.3e-70 270.8 250 61.2
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.4e-69 267.3 198 77.3
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 2.0e-68 263.5 239 66.1
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 5.0e-67 258.8 275 58.2
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.4e-64 250.8 300 55.0
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.8e-64 250.4 149 94.0
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 9.1e-61 238.0 231 63.2
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.6e-60 237.3 182 75.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 3.5e-60 236.1 183 73.2
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.5e-59 231.9 306 55.9
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 4.5e-52 209.1 130 86.2
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.3e-51 206.8 184 68.5
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.2e-48 195.7 244 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 7.5e-47 191.8 250 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 9.8e-47 191.4 250 45.2
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 2.2e-46 190.3 273 47.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.9e-42 177.2 221 46.2
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.7e-38 164.1 243 39.9
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 9.2e-37 158.3 179 54.2
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.0e-35 154.8 220 45.5
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 6.6e-35 152.1 176 54.0
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.7e-33 146.0 119 67.2
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 2.0e-31 140.6 120 64.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 9.8e-31 138.3 130 60.8
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 8.3e-30 135.2 79 94.9
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.0e-28 129.0 230 37.4
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.9e-22 110.2 174 44.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 7.1e-21 105.5 119 52.9
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.8e-17 93.6 97 54.6
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 6.8e-16 89.0 106 50.9
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 6.8e-16 89.0 106 50.9
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 9.9e-15 85.1 106 50.0
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 3.0e-11 73.6 68 55.9
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 2.8e-09 67.0 217 26.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 4.0e-08 63.2 184 32.1
unitig_748.g8292 Utricularia gibba HOM05D005102 ORTHO05D006090 9.0e-08 62.0 60 56.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 9.9e-07 58.5 62 50.0
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 55 52.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 55 52.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 55 52.7


User provided reference genes

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