Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.6e-245 851.7 438 100.0
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 6.0e-170 601.3 447 77.2
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.3e-145 520.4 405 72.8
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.8e-145 520.0 405 72.6
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 3.6e-138 495.7 405 69.4
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 8.8e-121 438.0 399 61.7
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.6e-120 436.4 407 60.2
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 1.7e-116 423.7 298 78.2
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.0e-113 412.5 408 56.9
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 5.7e-112 408.7 398 58.3
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 8.3e-111 404.8 400 59.0
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-107 394.4 301 71.4
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 2.7e-106 389.8 408 55.9
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 6.8e-105 385.2 407 55.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 4.4e-104 382.5 409 53.5
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.7e-104 382.1 403 55.6
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 7.7e-101 371.7 407 54.8
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.7e-100 370.5 407 55.3
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.7e-100 370.5 414 55.3
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 2.3e-100 370.2 409 52.6
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 2.9e-100 369.8 411 53.3
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.4e-97 360.9 411 51.8
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 8.9e-97 358.2 411 52.6
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.0e-96 357.1 410 52.4
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.0e-96 357.1 410 52.4
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.6e-96 356.7 412 52.7
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 7.5e-96 355.1 408 52.0
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.3e-95 354.4 408 52.0
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.7e-95 352.8 409 52.8
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 4.9e-95 352.4 403 54.1
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 3.2e-94 349.7 414 52.9
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.1e-94 349.4 401 51.1
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 4.1e-94 349.4 284 65.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 3.5e-93 346.3 413 49.6
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.5e-93 345.9 404 52.0
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 4.5e-93 345.9 413 49.6
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 7.8e-93 345.1 410 51.0
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.9e-92 343.2 408 49.8
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 3.3e-91 339.7 408 49.3
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 4.3e-91 339.3 401 50.6
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.3e-91 338.6 449 49.0
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.2e-90 337.8 407 50.1
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.6e-90 336.3 402 49.8
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 4.7e-90 335.9 415 50.1
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.3e-89 333.6 396 50.3
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.4e-88 329.7 449 48.8
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.4e-88 329.7 449 48.8
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 7.5e-88 328.6 409 48.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 9.8e-88 328.2 373 54.4
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 2.9e-87 326.6 409 47.7
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 3.7e-87 326.2 403 47.4
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.4e-86 323.6 385 51.7
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 4.6e-85 319.3 418 49.0
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 4.6e-85 319.3 403 46.4
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 4.6e-85 319.3 409 48.4
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 6.0e-85 318.9 407 47.7
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 7.3e-83 312.0 382 51.8
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 3.6e-82 309.7 302 57.0
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.7e-82 309.3 403 47.4
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 6.2e-82 308.9 392 47.4
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.5e-80 304.3 403 46.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 4.4e-80 302.8 403 47.1
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 5.8e-80 302.4 375 48.3
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 9.8e-80 301.6 403 46.4
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.4e-78 297.7 319 53.6
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 3.2e-78 296.6 405 45.9
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.2e-78 296.6 385 48.3
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 9.2e-78 295.0 404 46.3
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 6.0e-77 292.4 397 49.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 6.0e-77 292.4 404 46.0
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 7.8e-77 292.0 300 54.0
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.1e-75 288.1 394 47.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.9e-75 287.3 399 46.1
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.3e-75 286.2 401 46.1
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 5.6e-75 285.8 408 44.6
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.2e-74 284.6 403 45.2
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 8.1e-74 282.0 406 44.8
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 8.1e-74 282.0 397 45.8
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 8.1e-74 282.0 410 42.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.1e-73 281.6 266 60.2
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.5e-72 277.7 398 46.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.0e-72 277.3 403 41.9
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 2.6e-72 276.9 264 60.6
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 3.4e-72 276.6 299 52.8
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 9.9e-72 275.0 416 45.9
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.9e-71 273.5 389 46.0
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 4.9e-71 272.7 401 41.6
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.4e-71 272.3 302 55.0
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 8.3e-71 271.9 402 43.5
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.2e-70 270.0 296 54.1
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 9.2e-70 268.5 406 40.4
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.2e-69 268.1 406 43.8
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 2.7e-69 266.9 399 43.9
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 6.0e-69 265.8 407 40.8
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.3e-68 264.6 404 40.6
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.9e-68 263.1 413 40.2
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.9e-67 260.8 410 39.8
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 5.6e-67 259.2 394 40.4
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 2.0e-64 250.8 258 57.0
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 2.2e-63 247.3 402 41.0
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 2.9e-63 246.9 411 38.7
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 3.8e-63 246.5 410 38.3
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 4.9e-63 246.1 478 40.2
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 6.4e-63 245.7 396 42.4
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.1e-62 245.0 407 38.1
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 3.2e-62 243.4 410 38.0
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 4.2e-62 243.0 329 49.8
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 7.1e-62 242.3 410 37.6
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 2.1e-61 240.7 399 40.9
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 2.7e-61 240.4 404 43.3
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 6.0e-61 239.2 407 40.8
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 6.0e-61 239.2 409 37.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 4.3e-59 233.0 407 36.6
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 4.3e-59 233.0 407 36.6
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 9.6e-59 231.9 327 42.2
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.6e-58 231.1 406 36.9
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.1e-58 230.7 445 38.0
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 2.8e-58 230.3 258 53.1
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-57 228.4 407 36.1
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.8e-57 227.6 366 43.4
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.4e-57 227.3 406 36.2
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-56 224.2 397 42.6
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-56 224.2 251 51.4
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 6.4e-55 219.2 279 47.7
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 4.2e-54 216.5 406 34.7
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.2e-53 214.9 377 37.7
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.2e-53 214.9 407 36.4
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 2.7e-53 213.8 324 44.4
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.3e-52 211.5 402 35.6
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.5e-51 207.2 264 48.9
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 9.6e-51 205.3 183 65.0
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.4e-48 196.8 186 58.6
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.8e-48 196.1 357 37.5
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 9.9e-48 195.3 243 48.1
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 9.9e-48 195.3 347 36.9
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.8e-47 193.4 369 35.2
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-46 190.7 386 37.6
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 4.6e-45 186.4 381 33.9
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.3e-44 184.1 360 35.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 3.0e-44 183.7 448 31.0
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 9.0e-41 172.2 157 62.4
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.3e-34 151.8 192 49.5
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.1e-33 147.1 158 53.8
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 3.1e-33 147.1 399 32.3
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.2e-32 145.2 186 46.8
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.5e-32 144.8 188 43.1
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 7.2e-30 136.0 109 65.1
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.2e-29 135.2 127 58.3
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.0e-28 132.1 149 54.4
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 5.1e-28 129.8 219 38.4
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.1e-27 128.6 158 54.4
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.4e-25 121.7 222 40.5
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.8e-25 121.3 404 30.0
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.4e-25 120.9 152 49.3
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 4.5e-24 116.7 86 72.1
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.3e-23 115.2 106 62.3
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.7e-23 114.8 109 56.9
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 2.7e-21 107.5 155 42.6
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 8.8e-20 102.4 121 50.4
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.5e-19 101.7 68 72.1
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 2.0e-16 91.3 82 67.1
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 2.2e-15 87.8 97 48.5
PGSC0003DMG402008294 Solanum tuberosum HOM05D004223 ORTHO05D004792 2.2e-15 87.8 51 92.2
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.0e-12 79.0 75 65.3
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.4e-11 73.6 112 37.5
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 8.2e-10 69.3 334 26.6
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 2.9e-07 60.8 100 39.0


User provided reference genes

Program Settings