Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 4457.1 2458 100.0
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 4219.1 2462 95.2
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 3623.2 2461 82.4
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 3569.6 2460 82.6
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 3498.4 2599 77.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 3437.9 2335 82.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2295.4 2522 59.1
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2127.8 2514 55.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2103.9 2496 54.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2075.8 2520 54.7
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2035.8 2539 53.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2034.6 2536 52.7
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2014.2 2520 53.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2011.1 2513 53.0
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1995.7 2513 53.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1984.1 2535 53.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1950.6 2548 51.8
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1939.9 2511 52.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1939.5 2529 52.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1932.9 2147 58.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1928.3 2555 51.0
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1921.7 2529 51.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1919.4 2533 51.8
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1919.1 2513 50.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1914.4 2516 53.2
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1911.3 2517 51.6
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1905.2 2511 51.5
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1902.9 2518 51.1
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1895.9 2546 51.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1845.1 2543 51.0
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1844.3 2523 52.3
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1843.9 2462 51.2
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1835.5 2526 50.4
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1831.2 2504 51.8
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1830.8 2501 51.3
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1829.7 2027 58.1
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1825.8 2521 50.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1821.6 2521 50.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1816.6 2513 50.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1816.2 2521 50.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1815.4 2584 49.5
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1808.1 2521 50.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1803.5 2592 49.2
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1791.5 2583 48.9
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1789.2 2503 49.7
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1785.0 2577 49.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1775.4 2526 49.1
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1751.1 2507 49.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1750.7 2516 48.6
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1747.3 2493 49.5
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1716.8 2513 49.6
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1711.0 2525 48.3
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1708.7 2503 48.7
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1700.3 2526 48.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1699.5 2517 47.6
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1697.9 2530 48.9
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1678.3 2531 48.4
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1661.4 2514 47.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1660.6 2507 48.1
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1659.8 2327 50.8
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1657.1 2503 47.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1655.6 2518 48.1
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1652.9 2506 47.8
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1643.6 2519 48.4
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1630.5 2512 46.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1626.3 2534 46.1
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1620.1 2517 47.5
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1617.4 2506 47.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1606.7 2443 46.9
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1604.0 2527 47.9
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1601.6 2500 46.6
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1589.3 2358 47.9
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1581.6 2472 47.1
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1580.8 2577 47.0
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1567.4 2586 44.0
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1559.3 2504 47.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1520.8 2505 46.2
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1520.0 2497 45.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1515.7 2505 46.3
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1467.2 2475 45.7
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1413.7 2488 44.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1404.4 2506 44.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1395.2 2512 44.1
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1394.8 2514 44.1
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1344.7 2494 43.1
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1343.2 2520 43.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1329.3 2631 40.0
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1325.1 1734 51.1
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1303.1 1879 48.0
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1295.0 2617 40.8
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1279.2 2527 40.5
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1275.0 2509 41.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1217.6 2543 40.1
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1168.3 2496 40.5
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1159.4 2595 39.1
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1144.0 2506 41.4
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1119.8 2507 39.8
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1117.1 2460 40.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1091.6 2442 40.3
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.7e-311 1074.3 1288 53.6
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 2.3e-290 1003.8 2355 38.0
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 2.9e-285 986.9 2354 38.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 9.9e-270 935.3 1717 44.8
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.2e-261 907.5 960 56.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.2e-253 880.9 2532 36.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 9.9e-238 828.9 2747 34.9
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.2e-229 801.2 715 63.9
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.8e-223 781.6 1068 51.3
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 6.7e-218 763.1 2429 35.0
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.5e-217 761.9 451 87.6
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.3e-208 729.9 1032 51.1
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.4e-204 718.8 948 54.3
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.5e-204 716.8 2448 34.6
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 9.4e-204 716.1 2435 35.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 9.4e-204 716.1 2435 35.0
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 6.1e-203 713.4 2449 34.4
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.4e-199 701.4 2480 34.7
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.7e-184 652.1 1925 36.2
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.1e-175 620.9 1807 34.3
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-166 592.0 2569 30.3
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.5e-164 585.9 972 45.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.9e-164 585.5 568 61.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.8e-146 525.8 1379 37.4
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.6e-145 521.9 934 41.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 9.6e-140 503.4 510 55.1
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 7.4e-124 450.7 786 42.6
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.9e-116 426.0 689 45.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.7e-110 405.6 2965 28.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-103 383.3 983 35.4
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 6.7e-101 374.4 1832 30.1
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.7e-94 352.4 1218 31.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 8.2e-83 314.3 2808 28.0
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.6e-78 300.1 294 53.4
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-59 237.3 372 41.1
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.7e-59 236.9 2807 27.0
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.6e-54 220.3 2796 26.6
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.0e-53 217.6 1056 31.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 9.8e-52 211.1 564 35.5
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 8.6e-48 198.0 2438 26.0
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.3e-43 184.1 254 50.0
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.9e-43 182.2 248 49.6
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 4.6e-41 175.6 317 40.4
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.0e-40 174.5 508 35.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.3e-40 174.1 584 31.7
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-39 171.0 225 48.4
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.0e-33 148.7 343 37.0
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 6.6e-32 145.2 1252 26.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.3e-27 131.0 162 51.9
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 2.4e-26 126.7 162 51.2
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 5.6e-23 115.5 317 34.4
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.6e-22 114.0 124 54.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.6e-17 95.9 257 36.6
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.7e-16 94.0 147 44.2
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.3e-15 89.4 214 33.2
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.4e-13 83.6 63 65.1
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.1e-13 83.2 61 67.2
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 8.4e-11 75.1 76 63.2
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.1e-10 74.7 124 41.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 8.7e-08 65.1 81 50.6
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 7.4e-07 62.0 125 39.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 6.2e-06 58.9 97 40.2


User provided reference genes

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