Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 3.5e-177 624.8 305 100.0
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.5e-170 602.1 305 96.1
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 6.3e-158 560.8 313 89.5
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 1.8e-157 559.3 313 89.1
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 8.5e-155 550.4 313 88.5
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 3.5e-132 475.3 323 74.0
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.1e-130 470.3 286 78.7
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.9e-130 469.5 274 81.8
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 7.2e-130 467.6 282 79.4
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.2e-129 466.8 323 71.8
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 4.7e-129 464.9 309 74.1
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 1.4e-128 463.4 312 73.7
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.4e-128 463.4 309 74.1
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 2.3e-128 462.6 274 82.5
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 4.0e-128 461.8 309 73.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 5.2e-128 461.5 309 73.8
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.5e-127 459.9 309 73.8
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.5e-127 459.9 327 70.9
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 3.4e-127 458.8 274 81.0
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.3e-126 456.8 280 80.0
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.7e-126 456.4 322 69.9
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 3.7e-126 455.3 280 80.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 4.8e-126 454.9 275 79.6
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.1e-125 453.8 284 77.5
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.1e-125 453.8 275 79.6
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.1e-125 453.8 280 78.9
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.4e-125 453.4 269 82.2
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.8e-125 453.0 261 83.9
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.8e-125 453.0 288 76.7
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 2.4e-125 452.6 262 82.4
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.4e-125 452.6 289 77.9
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.0e-124 449.5 286 75.9
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.7e-124 449.1 262 83.2
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 2.7e-124 449.1 301 75.4
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 4.5e-124 448.4 267 81.6
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 7.7e-124 447.6 274 79.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 1.3e-123 446.8 285 75.8
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.3e-123 446.8 277 79.1
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.7e-123 446.4 283 77.4
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.5e-122 443.4 265 83.0
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 1.5e-122 443.4 268 79.9
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 1.9e-122 443.0 266 85.3
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 2.5e-122 442.6 280 77.5
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 3.2e-122 442.2 275 78.5
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.2e-121 440.3 292 75.0
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.6e-121 439.9 276 77.2
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.7e-121 439.1 254 83.9
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 2.7e-121 439.1 275 78.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 2.7e-121 439.1 275 77.1
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 4.7e-121 438.3 275 78.2
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 8.0e-121 437.6 278 77.7
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.4e-120 436.8 313 70.9
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 2.3e-120 436.0 275 77.5
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 5.2e-120 434.9 257 82.9
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 8.8e-120 434.1 259 81.1
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 8.8e-120 434.1 275 76.4
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.2e-119 433.7 266 79.3
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 1.5e-119 433.3 272 77.2
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 2.0e-119 433.0 263 79.1
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 4.4e-119 431.8 267 76.0
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 1.7e-118 429.9 289 74.7
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 2.8e-118 429.1 298 71.1
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 1.4e-117 426.8 284 73.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 2.4e-117 426.0 284 72.5
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.6e-116 423.3 284 71.8
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.0e-116 422.9 284 71.5
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 2.0e-116 422.9 285 72.3
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 4.5e-116 421.8 325 68.3
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 7.7e-116 421.0 265 75.8
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 1.7e-115 419.9 285 73.7
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 2.3e-115 419.5 283 72.8
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 8.6e-115 417.5 264 77.7
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 3.0e-112 409.1 274 70.8
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 7.5e-111 404.4 263 76.4
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 5.6e-106 388.3 226 83.2
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 6.2e-105 384.8 284 66.9
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 1.5e-103 380.2 258 71.3
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 1.5e-103 380.2 244 78.7
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 2.4e-101 372.9 315 62.5
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 9.5e-98 360.9 212 81.1
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 8.9e-96 354.4 203 82.3
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 2.6e-95 352.8 275 66.9
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.9e-94 349.4 258 64.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.4e-93 347.1 280 60.7
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 4.1e-93 345.5 232 73.7
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.1e-82 310.8 293 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.0e-79 300.1 243 59.3
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 1.2e-76 290.8 216 63.4
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-71 273.1 244 61.5
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-71 273.1 244 61.5
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 6.0e-68 261.9 165 78.2
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 4.3e-66 255.8 153 83.0
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 8.1e-65 251.5 172 73.3
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 8.2e-57 224.9 135 77.8
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 1.5e-55 220.7 236 53.0
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 3.3e-50 203.0 280 42.1
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 4.2e-45 186.0 271 41.7
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 9.3e-45 184.9 119 75.6
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 1.5e-42 177.6 98 87.8
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.2e-41 173.7 275 36.0
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 3.7e-41 172.9 112 75.9
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 3.3e-34 149.8 79 83.5
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 4.2e-29 132.9 120 56.7
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 2.8e-25 120.2 287 28.9
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 4.5e-23 112.8 112 54.5
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 2.5e-21 107.1 275 26.9
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.2e-20 104.8 104 56.7
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 2.6e-18 97.1 77 59.7
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.0e-11 73.6 309 26.2
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.0e-11 73.6 308 25.6
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 8.8e-11 72.0 300 25.3
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.0e-10 70.9 296 24.3
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 7.5e-10 68.9 297 24.6
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 2.8e-09 67.0 297 26.3
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.8e-09 67.0 306 25.8
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 4.8e-09 66.2 308 26.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 6.3e-09 65.9 294 25.2
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 8.3e-09 65.5 330 24.5
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.1e-08 65.1 299 24.4
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.4e-08 64.7 294 25.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.4e-08 64.7 290 25.9
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 4.1e-08 63.2 290 24.1
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.1e-08 63.2 280 24.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 4.1e-08 63.2 280 24.6
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 5.4e-08 62.8 315 24.4
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.0e-08 62.4 280 25.0
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 9.1e-08 62.0 337 23.7
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.2e-07 61.6 286 24.8
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.0e-07 60.8 281 25.3
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.7e-07 60.5 303 24.1
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.7e-07 60.5 45 68.9
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.5e-07 60.1 331 24.2
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 4.5e-07 59.7 301 24.3
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.0e-06 58.5 250 24.0
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 5.0e-06 56.2 198 26.3


User provided reference genes

Program Settings