Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001021g0010 Nicotiana tabacum HOM05D002291 ORTHO05D002496 9.6e-46 186.4 91 100.0
Nitab4.5_0001151g0160 Nicotiana tabacum HOM05D002291 ORTHO05D002496 6.9e-20 100.5 57 80.7
Peaxi162Scf00347g00021 Petunia axillaris HOM05D002291 ORTHO05D002496 4.5e-19 97.8 54 85.2
Nitab4.5_0001021g0030 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.3e-18 96.3 54 85.2
PGSC0003DMG400030749 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.4e-17 92.8 52 82.7
Solyc07g007080.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.5e-17 92.0 54 79.6
Nitab4.5_0005384g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 7.2e-17 90.5 55 81.8
PGSC0003DMG400030739 Solanum tuberosum HOM05D002291 ORTHO05D002496 7.2e-17 90.5 54 77.8
Peaxi162Scf00347g00011 Petunia axillaris HOM05D002291 ORTHO05D002496 1.6e-16 89.4 54 75.9
Peaxi162Scf00347g00003 Petunia axillaris HOM05D002291 ORTHO05D002496 1.0e-15 86.7 54 77.8
Solyc07g007100.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 4.3e-14 81.3 51 76.5
Haze_19315 Corylus avellana HOM05D002291 ORTHO05D002496 6.9e-12 73.9 50 64.0
Haze_18941 Corylus avellana HOM05D002291 ORTHO05D002496 1.5e-11 72.8 54 63.0
Hma1.2p1_0182F.1_g080530 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 2.6e-11 72.0 54 63.0
Cfa020886 Carpinus fangiana HOM05D002291 ORTHO05D002496 4.5e-11 71.2 43 76.7
Aqoxy6G00792 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 7.7e-11 70.5 54 55.6
Dinv41421 Davidia involucrata HOM05D002291 ORTHO05D002496 7.7e-11 70.5 48 68.8
Eucgr.C00432 Eucalyptus grandis HOM05D002291 ORTHO05D002496 1.0e-10 70.1 54 59.3
Manes.14G139050 Manihot esculenta HOM05D002291 ORTHO05D002496 1.3e-10 69.7 54 59.3
ECA236G3823 Erigeron canadensis HOM05D000006 ORTHO05D010593 1.7e-10 69.3 46 69.6
DCAR_014926 Daucus carota HOM05D002291 ORTHO05D002496 2.2e-10 68.9 75 46.7
DCAR_014927 Daucus carota HOM05D002291 ORTHO05D002496 2.2e-10 68.9 75 46.7
DCAR_014928 Daucus carota HOM05D002291 ORTHO05D002496 2.2e-10 68.9 75 46.7
Ciclev10010646m.g Citrus clementina HOM05D002291 ORTHO05D002496 2.9e-10 68.6 54 59.3
Cpa.g.sc46.89 Carica papaya HOM05D002291 ORTHO05D002496 3.8e-10 68.2 54 57.4
QL02p091378 Quercus lobata HOM05D002291 ORTHO05D002496 3.8e-10 68.2 40 77.5
DCAR_014929 Daucus carota HOM05D002291 ORTHO05D002496 5.0e-10 67.8 49 61.2
Migut.K00372 Erythranthe guttata HOM05D002291 ORTHO05D002496 5.0e-10 67.8 48 64.6
Eucgr.C00433 Eucalyptus grandis HOM05D002291 ORTHO05D002496 5.0e-10 67.8 49 63.3
Prupe.7G254000 Prunus persica HOM05D002291 ORTHO05D002496 5.0e-10 67.8 38 78.9
Migut.K00370 Erythranthe guttata HOM05D002291 ORTHO05D002496 8.5e-10 67.0 52 61.5
Prupe.7G254200 Prunus persica HOM05D002291 ORTHO05D002496 8.5e-10 67.0 38 78.9
DCAR_014925 Daucus carota HOM05D002291 ORTHO05D002496 1.1e-09 66.6 61 50.8
Gohir.A06G049449 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.9e-09 65.9 47 63.8
Thecc.09G142200 Theobroma cacao HOM05D002291 ORTHO05D002496 1.9e-09 65.9 48 62.5
Migut.K00374 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.5e-09 65.5 52 59.6
Gohir.A06G049366 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.5e-09 65.5 53 60.4
Manes.14G139301 Manihot esculenta HOM05D002291 ORTHO05D002496 2.5e-09 65.5 49 61.2
RcHm_v2.0_Chr2g0086641 Rosa chinensis HOM05D002291 ORTHO05D002496 2.5e-09 65.5 52 55.8
Hma1.2p1_0182F.1_g080520 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 3.2e-09 65.1 48 64.6
Hma1.2p1_1784F.1_g302180 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 3.2e-09 65.1 49 59.2
Hma1.2p1_2402F.1_g321405 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 3.2e-09 65.1 49 59.2
Prupe.1G525100 Prunus persica HOM05D002291 ORTHO05D002496 3.2e-09 65.1 39 71.8
Prupe.7G254300 Prunus persica HOM05D002291 ORTHO05D002496 3.2e-09 65.1 36 80.6
RcHm_v2.0_Chr2g0086491 Rosa chinensis HOM05D002291 ORTHO05D002496 3.2e-09 65.1 57 52.6
FAN28G1283 Fragaria x ananassa HOM05D002291 ORTHO05D002496 4.2e-09 64.7 38 73.7
FAN28G2256 Fragaria x ananassa HOM05D002291 ORTHO05D002496 4.2e-09 64.7 38 73.7
Gohir.D06G048932 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.2e-09 64.7 46 65.2
Gorai.010G055400 Gossypium raimondii HOM05D002291 ORTHO05D002496 4.2e-09 64.7 46 65.2
Oeu040786.1 Olea europaea HOM05D002291 ORTHO05D002496 4.2e-09 64.7 42 71.4
Prupe.7G253900 Prunus persica HOM05D002291 ORTHO05D002496 4.2e-09 64.7 38 76.3
Prupe.7G254100 Prunus persica HOM05D002291 ORTHO05D002496 4.2e-09 64.7 37 78.4
QL02p091368 Quercus lobata HOM05D002291 ORTHO05D002496 4.2e-09 64.7 43 69.8
Gohir.D06G049075 Gossypium hirsutum HOM05D002291 ORTHO05D002496 5.5e-09 64.3 49 61.2
Gorai.010G055800 Gossypium raimondii HOM05D002291 ORTHO05D002496 5.5e-09 64.3 49 61.2
COL.COLO4_24095 Corchorus olitorius HOM05D002291 ORTHO05D002496 7.2e-09 63.9 54 57.4
Migut.K00373 Erythranthe guttata HOM05D002291 ORTHO05D002496 7.2e-09 63.9 52 57.7
FAN19G2591 Fragaria x ananassa HOM05D002291 ORTHO05D002496 7.2e-09 63.9 51 60.8
Phvul.003G175000 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 7.2e-09 63.9 49 59.2
RcHm_v2.0_Chr2g0086581 Rosa chinensis HOM05D002291 ORTHO05D002496 9.4e-09 63.5 36 75.0
MD15G1159300 Malus domestica HOM05D002291 ORTHO05D002496 1.2e-08 63.2 44 63.6
FvH4_1g01670 Fragaria vesca HOM05D002291 ORTHO05D002496 1.6e-08 62.8 36 72.2
MD15G1158700 Malus domestica HOM05D002291 ORTHO05D002496 1.6e-08 62.8 44 63.6
COL.COLO4_24090 Corchorus olitorius HOM05D002291 ORTHO05D002496 2.1e-08 62.4 39 69.2
FAN19G2875 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.1e-08 62.4 36 72.2
Gohir.D06G048866 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.1e-08 62.4 46 60.9
Gorai.010G055300 Gossypium raimondii HOM05D002291 ORTHO05D002496 2.1e-08 62.4 46 60.9
COL.COLO4_24097 Corchorus olitorius HOM05D002291 ORTHO05D002496 2.7e-08 62.0 43 62.8
Migut.K00369 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.7e-08 62.0 36 72.2
Eucgr.C00430 Eucalyptus grandis HOM05D002291 ORTHO05D002496 2.7e-08 62.0 47 57.4
Glyma.13G157100 Glycine max HOM05D002291 ORTHO05D002496 2.7e-08 62.0 39 69.2
Glyma.17G104700 Glycine max HOM05D002291 ORTHO05D002496 2.7e-08 62.0 39 69.2
Atru.chr7.210 Acer truncatum HOM05D002291 ORTHO05D002496 3.6e-08 61.6 43 67.4
FAN26G0066 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.6e-08 61.6 36 72.2
Potri.018G113901 Populus trichocarpa HOM05D002291 ORTHO05D002496 3.6e-08 61.6 43 60.5
Prupe.7G254400 Prunus persica HOM05D002291 ORTHO05D002496 3.6e-08 61.6 38 71.1
Gohir.D13G208600 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.7e-08 61.2 50 58.0
Gorai.013G237700 Gossypium raimondii HOM05D002291 ORTHO05D002496 4.7e-08 61.2 50 58.0
MD15G1159200 Malus domestica HOM05D002291 ORTHO05D002496 4.7e-08 61.2 36 75.0
RcHm_v2.0_Chr2g0086591 Rosa chinensis HOM05D002291 ORTHO05D002496 4.7e-08 61.2 48 60.4
FvH4_1g01630 Fragaria vesca HOM05D002291 ORTHO05D002496 6.1e-08 60.8 39 69.2
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 6.1e-08 60.8 39 69.2
Gohir.A13G203300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 6.1e-08 60.8 37 70.3
Potri.006G189700 Populus trichocarpa HOM05D002291 ORTHO05D002496 6.1e-08 60.8 49 55.1
RcHm_v2.0_Chr2g0086611 Rosa chinensis HOM05D002291 ORTHO05D002496 1.0e-07 60.1 41 63.4
MBI15_g31410_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 1.4e-07 59.7 38 65.8
Actinidia04248 Actinidia chinensis HOM05D002291 ORTHO05D002496 1.8e-07 59.3 69 43.5
MD15G1159500 Malus domestica HOM05D002291 ORTHO05D002496 1.8e-07 59.3 44 61.4
RcHm_v2.0_Chr2g0086601 Rosa chinensis HOM05D002291 ORTHO05D002496 1.8e-07 59.3 51 58.8
ATR0629G115 Amborella trichopoda HOM05D002291 ORTHO05D002496 2.3e-07 58.9 45 57.8
Gohir.D06G049025 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.3e-07 58.9 45 62.2
Gorai.010G055600 Gossypium raimondii HOM05D002291 ORTHO05D002496 2.3e-07 58.9 45 62.2
MD15G1158800 Malus domestica HOM05D002291 ORTHO05D002496 2.3e-07 58.9 46 60.9
Aqoxy7G03526 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 3.0e-07 58.5 58 50.0
FvH4_1g01650 Fragaria vesca HOM05D002291 ORTHO05D002496 3.0e-07 58.5 38 68.4
PSO832G3277 Papaver somniferum HOM05D002291 ORTHO05D002496 3.0e-07 58.5 40 62.5
Eucgr.C00431 Eucalyptus grandis HOM05D002291 ORTHO05D002496 3.9e-07 58.2 49 53.1
Gohir.A06G049700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 3.9e-07 58.2 49 59.2
Gohir.D06G049050 Gossypium hirsutum HOM05D002291 ORTHO05D002496 3.9e-07 58.2 47 55.3
Peaxi162Scf00347g00009 Petunia axillaris HOM05D002291 ORTHO05D002496 5.1e-07 57.8 56 53.6
Aqoxy7G03523 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 6.7e-07 57.4 44 59.1
Gorai.010G055700 Gossypium raimondii HOM05D002291 ORTHO05D002496 6.7e-07 57.4 47 55.3
Aqoxy7G03527 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 8.8e-07 57.0 72 37.5
FvH4_1g01620 Fragaria vesca HOM05D002291 ORTHO05D002496 8.8e-07 57.0 36 66.7
FAN23G0828 Fragaria x ananassa HOM05D002291 ORTHO05D002496 8.8e-07 57.0 39 61.5
FAN28G2220 Fragaria x ananassa HOM05D002291 ORTHO05D002496 8.8e-07 57.0 39 61.5
Nn2g12256 Nelumbo nucifera HOM05D002291 ORTHO05D002496 8.8e-07 57.0 42 59.5
FvH4_1g01640 Fragaria vesca HOM05D002291 ORTHO05D002496 1.1e-06 56.6 35 65.7
MD15G1158900 Malus domestica HOM05D002291 ORTHO05D002496 1.1e-06 56.6 44 59.1
MD15G1159000 Malus domestica HOM05D002291 ORTHO05D002496 1.1e-06 56.6 44 59.1
PGR102G1132 Punica granatum HOM05D002291 ORTHO05D002496 1.1e-06 56.6 47 53.2
Cpa.g.sc46.90 Carica papaya HOM05D002291 ORTHO05D002496 1.5e-06 56.2 51 45.1
Gohir.D06G048766 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.0e-06 55.8 64 46.9
Nn8g39724 Nelumbo nucifera HOM05D002291 ORTHO05D002496 2.0e-06 55.8 66 43.9
BcaC01g05064 Brassica carinata HOM05D002291 ORTHO05D002496 2.6e-06 55.5 47 53.2
BcaC01g05065 Brassica carinata HOM05D002291 ORTHO05D002496 2.6e-06 55.5 47 53.2
C03p30620 Brassica napus HOM05D002291 ORTHO05D002496 2.6e-06 55.5 47 53.2
BolC3t15412H Brassica oleracea HOM05D002291 ORTHO05D002496 2.6e-06 55.5 47 53.2
CANSAT11G1356 Cannabis sativa HOM05D002291 ORTHO05D002496 2.6e-06 55.5 55 50.9
Migut.K00371 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.6e-06 55.5 49 53.1
Solyc07g007070.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.6e-06 55.5 48 47.9
A03p25670 Brassica napus HOM05D002291 ORTHO05D002496 3.3e-06 55.1 60 46.7
BraA03t11782Z Brassica rapa HOM05D002291 ORTHO05D002496 3.3e-06 55.1 60 46.7
FAN23G1547 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.3e-06 55.1 48 54.2
TAR626G1664 Trochodendron aralioides HOM05D002291 ORTHO05D002496 3.3e-06 55.1 43 60.5
Glyma.15G202600 Glycine max HOM05D002291 ORTHO05D002496 5.7e-06 54.3 51 43.1
Medtr4g116620 Medicago truncatula HOM05D002291 ORTHO05D002496 5.7e-06 54.3 39 61.5
Medtr4g116640 Medicago truncatula HOM05D002291 ORTHO05D002496 5.7e-06 54.3 39 61.5
Nitab4.5_0005330g0060 Nicotiana tabacum HOM05D002291 ORTHO05D002496 7.4e-06 53.9 62 45.2
Gohir.A06G049200 Gossypium hirsutum HOM05D002291 ORTHO05D002496 9.7e-06 53.5 43 55.8
Gohir.D06G048900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 9.7e-06 53.5 43 55.8
Gorai.010G055100 Gossypium raimondii HOM05D002291 ORTHO05D002496 9.7e-06 53.5 43 55.8


User provided reference genes

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