Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001018g0130 Nicotiana tabacum HOM05D000671 ORTHO05D282804 3.5e-46 188.0 96 100.0
ECA246G4462 Erigeron canadensis HOM05D000671 ORTHO05D004414 7.6e-17 90.5 127 48.0
Duzib041G0671 Durio zibethinus HOM05D000671 ORTHO05D004414 9.9e-17 90.1 127 48.0
Solyc11g012880.2 Solanum lycopersicum HOM05D000671 ORTHO05D004414 9.9e-17 90.1 111 53.2
Sopen11g007620 Solanum pennellii HOM05D000671 ORTHO05D004414 9.9e-17 90.1 111 53.2
MSTRG.25386 Avicennia marina HOM05D000671 ORTHO05D004414 1.7e-16 89.4 126 46.0
arahy.Tifrunner.gnm1.ann1.BDH7ZM Arachis hypogaea HOM05D000671 ORTHO05D004414 2.2e-16 89.0 126 47.6
arahy.Tifrunner.gnm1.ann1.NY6I93 Arachis hypogaea HOM05D000671 ORTHO05D004414 2.2e-16 89.0 126 47.6
Nitab4.5_0001803g0060 Nicotiana tabacum HOM05D000671 ORTHO05D004414 2.2e-16 89.0 111 54.1
Hund16857 Selenicereus undatus HOM05D000671 ORTHO05D004414 2.9e-16 88.6 104 54.8
TAR376G0502 Trochodendron aralioides HOM05D000671 ORTHO05D004414 3.7e-16 88.2 111 52.3
Lj1g0021001 Lotus japonicus HOM05D000671 ORTHO05D004414 4.9e-16 87.8 111 50.5
Oeu026149.1 Olea europaea HOM05D000671 ORTHO05D004414 4.9e-16 87.8 111 49.5
PSO170G1463 Papaver somniferum HOM05D000671 ORTHO05D004414 4.9e-16 87.8 111 51.4
PSO528G0026 Papaver somniferum HOM05D000671 ORTHO05D004414 4.9e-16 87.8 111 51.4
ATR1134G100 Amborella trichopoda HOM05D000671 ORTHO05D004414 6.4e-16 87.4 110 52.7
CSS0020763 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 6.4e-16 87.4 123 47.2
CSS0047904 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 6.4e-16 87.4 123 47.2
Hma1.2p1_0186F.1_g081750 Hydrangea macrophylla HOM05D000671 ORTHO05D004414 6.4e-16 87.4 123 49.6
Nitab4.5_0004882g0020 Nicotiana tabacum HOM05D000671 ORTHO05D004414 6.4e-16 87.4 104 54.8
TAR628G0319 Trochodendron aralioides HOM05D000671 ORTHO05D004414 6.4e-16 87.4 111 51.4
DCAR_011618 Daucus carota HOM05D000671 ORTHO05D004414 8.3e-16 87.0 111 49.5
Oeu040423.1 Olea europaea HOM05D000671 ORTHO05D004414 8.3e-16 87.0 111 49.5
Pp3c4_24270 Physcomitrium patens HOM05D000671 ORTHO05D004414 8.3e-16 87.0 123 48.0
Dinv27322 Davidia involucrata HOM05D000671 ORTHO05D004414 1.1e-15 86.7 111 51.4
HanXRQChr05g0150541 Helianthus annuus HOM05D000671 ORTHO05D004414 1.1e-15 86.7 111 50.5
Lj7C339G13 Lonicera japonica HOM05D000671 ORTHO05D004414 1.1e-15 86.7 111 51.4
Oeu017293.2 Olea europaea HOM05D000671 ORTHO05D004414 1.1e-15 86.7 111 51.4
Peaxi162Scf00051g00087 Petunia axillaris HOM05D000671 ORTHO05D004414 1.1e-15 86.7 110 52.7
Phvul.009G124700 Phaseolus vulgaris HOM05D000671 ORTHO05D004414 1.1e-15 86.7 126 46.8
Solyc06g060370.3 Solanum lycopersicum HOM05D000671 ORTHO05D004414 1.1e-15 86.7 110 52.7
Sopen06g020510 Solanum pennellii HOM05D000671 ORTHO05D004414 1.1e-15 86.7 110 52.7
PGSC0003DMG400017572 Solanum tuberosum HOM05D000671 ORTHO05D004414 1.1e-15 86.7 110 52.7
Ciclev10001739m.g Citrus clementina HOM05D000671 ORTHO05D004414 1.4e-15 86.3 126 45.2
Migut.N03285 Erythranthe guttata HOM05D000671 ORTHO05D004414 1.4e-15 86.3 110 53.6
Glyma.13G080400 Glycine max HOM05D000671 ORTHO05D004414 1.4e-15 86.3 111 51.4
Glyma.14G148900 Glycine max HOM05D000671 ORTHO05D004414 1.4e-15 86.3 111 51.4
Lsat_1_v5_gn_6_109681 Lactuca sativa HOM05D000671 ORTHO05D004414 1.4e-15 86.3 110 51.8
CsaV3_4G028310 Cucumis sativus L. HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 52.3
Lj1g0021857 Lotus japonicus HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 50.5
Lalb_Chr11g0065871 Lupinus albus HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 50.5
Manes.18G076500 Manihot esculenta HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 50.5
Sed0003658 Sechium edule HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 52.3
Sed0024953 Sechium edule HOM05D000671 ORTHO05D004414 1.9e-15 85.9 111 52.3
SGA_v2.0_scaffold28G12001 Striga asiatica HOM05D000671 ORTHO05D004414 1.9e-15 85.9 110 50.9
Dinv07457 Davidia involucrata HOM05D000671 ORTHO05D004414 2.4e-15 85.5 127 47.2
Gohir.A02G073200 Gossypium hirsutum HOM05D000671 ORTHO05D004414 2.4e-15 85.5 111 51.4
Gorai.005G089900 Gossypium raimondii HOM05D000671 ORTHO05D004414 2.4e-15 85.5 111 51.4
Oeu050915.3 Olea europaea HOM05D000671 ORTHO05D004414 2.4e-15 85.5 111 50.5
Os04g0692000 Oryza sativa ssp. japonica HOM05D000671 ORTHO05D004414 2.4e-15 85.5 110 51.8
SalBow7G4705 Salvia bowleyana HOM05D000671 ORTHO05D004414 2.4e-15 85.5 128 46.9
SGA_v2.0_scaffold25G11122 Striga asiatica HOM05D000671 ORTHO05D004414 2.4e-15 85.5 110 50.0
TAR381G0936 Trochodendron aralioides HOM05D000671 ORTHO05D004414 2.4e-15 85.5 110 50.9
VMungo1309G0646 Vigna mungo HOM05D000671 ORTHO05D004414 2.4e-15 85.5 126 46.0
Aqoxy6G00204 Aquilegia oxysepala HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 51.4
ClCG11G015700 Citrullus lanatus HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 52.3
DCAR_014090 Daucus carota HOM05D000671 ORTHO05D004414 3.2e-15 85.1 110 50.0
Gohir.D02G080500 Gossypium hirsutum HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 52.3
MD08G1164800 Malus domestica HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 49.5
Manes.02G162600 Manihot esculenta HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 50.5
Hund27021 Selenicereus undatus HOM05D000671 ORTHO05D004414 3.2e-15 85.1 110 51.8
Thecc.08G124000 Theobroma cacao HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 49.5
GSVIVG01008878001 Vitis vinifera HOM05D000671 ORTHO05D004414 3.2e-15 85.1 111 49.5
Aa31LG7G5830 Aethionema arabicum HOM05D000671 ORTHO05D004414 4.1e-15 84.7 127 44.9
AUR62019045 Chenopodium quinoa HOM05D000671 ORTHO05D004414 4.1e-15 84.7 110 50.9
AUR62027885 Chenopodium quinoa HOM05D000671 ORTHO05D004414 4.1e-15 84.7 110 50.9
Lalb_Chr04g0253421 Lupinus albus HOM05D000671 ORTHO05D004414 4.1e-15 84.7 111 50.5
Lalb_Chr08g0241471 Lupinus albus HOM05D000671 ORTHO05D004414 4.1e-15 84.7 111 49.5
Nn5g28256 Nelumbo nucifera HOM05D000671 ORTHO05D004414 4.1e-15 84.7 111 49.5
THA.LOC104813654 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 4.1e-15 84.7 111 49.5
HPP92_025162 Vanilla planifolia HOM05D000671 ORTHO05D004414 4.1e-15 84.7 111 50.5
AT1G77610 Arabidopsis thaliana HOM05D000671 ORTHO05D004414 5.4e-15 84.3 127 44.9
MSTRG.1449 Avicennia marina HOM05D000671 ORTHO05D004414 5.4e-15 84.3 110 51.8
A08p28780 Brassica napus HOM05D000671 ORTHO05D004414 5.4e-15 84.3 127 44.9
BraA08t34807Z Brassica rapa HOM05D000671 ORTHO05D004414 5.4e-15 84.3 127 44.9
CAN.G1040.13 Capsicum annuum HOM05D000671 ORTHO05D004414 5.4e-15 84.3 110 50.0
CARHR022220 Cardamine hirsuta HOM05D000671 ORTHO05D004414 5.4e-15 84.3 126 46.0
Ca_15189_v3 Cicer arietinum L. HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 50.5
Cc00_g04260 Coffea canephora HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 49.5
COL.COLO4_35938 Corchorus olitorius HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 50.5
MELO3C010474.2 Cucumis melo HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 51.4
DCAR_017423 Daucus carota HOM05D000671 ORTHO05D004414 5.4e-15 84.3 110 50.0
Glyma.04G250000 Glycine max HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 49.5
PGR042G3863 Punica granatum HOM05D000671 ORTHO05D004414 5.4e-15 84.3 110 50.0
vmacro00830 Vaccinium macrocarpon HOM05D000671 ORTHO05D004414 5.4e-15 84.3 123 48.8
Zm00001eb076560 Zea mays HOM05D000671 ORTHO05D004414 5.4e-15 84.3 111 49.5
Atru.chr13.1447 Acer truncatum HOM05D000671 ORTHO05D004414 7.1e-15 84.0 111 51.4
Atru.chr13.1471 Acer truncatum HOM05D000671 ORTHO05D004414 7.1e-15 84.0 111 51.4
ATR0810G243 Amborella trichopoda HOM05D000671 ORTHO05D004414 7.1e-15 84.0 112 49.1
EL10Ac1g01054 Beta vulgaris HOM05D000671 ORTHO05D004414 7.1e-15 84.0 110 50.9
CSS0040543 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 7.1e-15 84.0 110 50.9
CiPaw.06G030400 Carya illinoinensis HOM05D000671 ORTHO05D004414 7.1e-15 84.0 111 49.5
Lalb_Chr17g0343771 Lupinus albus HOM05D000671 ORTHO05D004414 7.1e-15 84.0 111 49.5
Cfa016010 Carpinus fangiana HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
CiPaw.05G222600 Carya illinoinensis HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Haze_00446 Corylus avellana HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Dinv07227 Davidia involucrata HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Migut.C01136 Erythranthe guttata HOM05D000671 ORTHO05D004414 9.2e-15 83.6 109 49.5
MD15G1350800 Malus domestica HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Medtr3g072380 Medicago truncatula HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Pp3c26_10920 Physcomitrium patens HOM05D000671 ORTHO05D004414 9.2e-15 83.6 123 47.2
Psat5g132080 Pisum sativum HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
Prupe.1G499700 Prunus persica HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 50.5
THA.LOC104800188 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
THA.LOC104817297 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 9.2e-15 83.6 111 49.5
BcaB03g15941 Brassica carinata HOM05D000671 ORTHO05D004414 1.2e-14 83.2 126 45.2
BcaC08g47601 Brassica carinata HOM05D000671 ORTHO05D004414 1.2e-14 83.2 126 45.2
Eucgr.F03784 Eucalyptus grandis HOM05D000671 ORTHO05D004414 1.2e-14 83.2 110 49.1
Glyma.06G112800 Glycine max HOM05D000671 ORTHO05D004414 1.2e-14 83.2 111 48.6
Potri.002G084500 Populus trichocarpa HOM05D000671 ORTHO05D004414 1.2e-14 83.2 111 49.5
Sp1g19410 Schrenkiella parvula HOM05D000671 ORTHO05D004414 1.2e-14 83.2 126 45.2
unitig_46.g18127 Utricularia gibba HOM05D000671 ORTHO05D004414 1.2e-14 83.2 109 51.4
AL142U10020 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 1.6e-14 82.8 110 49.1
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 1.6e-14 82.8 77 57.1
BolC7t40574H Brassica oleracea HOM05D000671 ORTHO05D105625 1.6e-14 82.8 77 57.1
Carub.0002s2450 Capsella rubella HOM05D000671 ORTHO05D004414 1.6e-14 82.8 110 49.1
CDE06G1519 Ceratophyllum demersum HOM05D000671 ORTHO05D004414 1.6e-14 82.8 69 66.7
Duzib116G0465 Durio zibethinus HOM05D000671 ORTHO05D004414 1.6e-14 82.8 111 48.6
RcHm_v2.0_Chr6g0295661 Rosa chinensis HOM05D000671 ORTHO05D004414 1.6e-14 82.8 111 50.5
Sc01g0001160 Simmondsia chinensis HOM05D000671 ORTHO05D004414 1.6e-14 82.8 110 50.0
BcaB03g11882 Brassica carinata HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 47.7
C08p21140 Brassica napus HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 47.7
BolC8t49754H Brassica oleracea HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 47.7
CANSAT25G1020 Cannabis sativa HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 48.6
Cpa.g.sc36.58 Carica papaya HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 48.6
Thhalv10009473m.g Eutrema salsugineum HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 47.7
FvH4_2g26800 Fragaria vesca HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 50.5
FAN15G2179 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.1e-14 82.4 110 51.8
FAN20G0237 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 50.5
FAN24G1882 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 50.5
FAN27G3513 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 50.5
Lj4A623G14 Lonicera japonica HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 50.5
Os08g0104900 Oryza sativa ssp. japonica HOM05D000671 ORTHO05D004414 2.1e-14 82.4 111 46.8
Potri.005G177200 Populus trichocarpa HOM05D000671 ORTHO05D004414 2.7e-14 82.0 111 48.6
Actinidia06598 Actinidia chinensis HOM05D000671 ORTHO05D004414 3.5e-14 81.6 111 47.7
Aa31LG4G7720 Aethionema arabicum HOM05D000671 ORTHO05D004414 3.5e-14 81.6 126 44.4
AL1G35070 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 3.5e-14 81.6 111 47.7
BcaB02g07114 Brassica carinata HOM05D000671 ORTHO05D004414 3.5e-14 81.6 110 49.1
A07p43000 Brassica napus HOM05D000671 ORTHO05D004414 3.5e-14 81.6 127 43.3
C06p51640 Brassica napus HOM05D000671 ORTHO05D004414 3.5e-14 81.6 127 43.3
BolC6t40182H Brassica oleracea HOM05D000671 ORTHO05D004414 3.5e-14 81.6 127 43.3
BraA07t30439Z Brassica rapa HOM05D000671 ORTHO05D004414 3.5e-14 81.6 127 43.3
BraA07t31821Z Brassica rapa HOM05D000671 ORTHO05D004414 3.5e-14 81.6 127 43.3
CARHR071120 Cardamine hirsuta HOM05D000671 ORTHO05D004414 3.5e-14 81.6 110 49.1
Thhalv10018828m.g Eutrema salsugineum HOM05D000671 ORTHO05D004414 3.5e-14 81.6 110 49.1
Sp5g32760 Schrenkiella parvula HOM05D000671 ORTHO05D004414 3.5e-14 81.6 110 49.1
TWI36G0716 Tripterygium wilfordii HOM05D000671 ORTHO05D004414 3.5e-14 81.6 111 46.8
TWI56G0190 Tripterygium wilfordii HOM05D000671 ORTHO05D004414 3.5e-14 81.6 111 46.8
Psat6g040960 Pisum sativum HOM05D000671 ORTHO05D004414 4.6e-14 81.3 111 45.0
SGA_v2.0_scaffold52G18971 Striga asiatica HOM05D000671 ORTHO05D004414 4.6e-14 81.3 110 48.2
BolC6t38255H Brassica oleracea HOM05D000671 ORTHO05D041904 6.0e-14 80.9 115 47.8
Carub.0001s2134 Capsella rubella HOM05D000671 ORTHO05D004414 6.0e-14 80.9 111 46.8
Ca_12614_v3 Cicer arietinum L. HOM05D000671 ORTHO05D004414 7.8e-14 80.5 111 47.7
Gohir.A05G234700 Gossypium hirsutum HOM05D000671 ORTHO05D004414 7.8e-14 80.5 111 46.8
Gohir.D05G237000 Gossypium hirsutum HOM05D000671 ORTHO05D004414 7.8e-14 80.5 111 46.8
Gorai.009G245400 Gossypium raimondii HOM05D000671 ORTHO05D004414 7.8e-14 80.5 111 46.8
Actinidia02616 Actinidia chinensis HOM05D000671 ORTHO05D004414 1.0e-13 80.1 110 49.1
A07p27910 Brassica napus HOM05D000671 ORTHO05D004414 1.0e-13 80.1 111 46.8
RhsimUnG0093100 Rhododendron simsii HOM05D000671 ORTHO05D004414 1.0e-13 80.1 82 57.3
vmacro12534 Vaccinium macrocarpon HOM05D000671 ORTHO05D004414 1.0e-13 80.1 110 49.1
AL2G37820 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 1.3e-13 79.7 110 47.3
CDE02G1244 Ceratophyllum demersum HOM05D000671 ORTHO05D004414 1.3e-13 79.7 109 48.6
TPR.G24054 Trifolium pratense HOM05D000671 ORTHO05D004414 1.3e-13 79.7 111 46.8
Actinidia23074 Actinidia chinensis HOM05D000671 ORTHO05D004414 1.7e-13 79.3 62 66.1
Duzib093G1798 Durio zibethinus HOM05D000671 ORTHO05D004414 1.7e-13 79.3 110 48.2
TPR.G25797 Trifolium pratense HOM05D000671 ORTHO05D004414 2.3e-13 79.0 111 45.9
AT1G21870 Arabidopsis thaliana HOM05D000671 ORTHO05D004414 3.9e-13 78.2 111 46.8
BcaC07g39125 Brassica carinata HOM05D000671 ORTHO05D004414 5.1e-13 77.8 70 58.6
C06p31160 Brassica napus HOM05D000671 ORTHO05D004414 5.1e-13 77.8 111 45.9
FAN15G0640 Fragaria x ananassa HOM05D000671 ORTHO05D004414 5.1e-13 77.8 69 62.3
Medtr1g030320 Medicago truncatula HOM05D000671 ORTHO05D004414 8.6e-13 77.0 111 45.0
C06p31000 Brassica napus HOM05D000671 ORTHO05D041904 3.3e-12 75.1 69 59.4
Zm00001eb260190 Zea mays HOM05D000671 ORTHO05D004414 5.6e-12 74.3 110 45.5
BcaB04g19400 Brassica carinata HOM05D000671 ORTHO05D004414 1.2e-11 73.2 69 58.0
C06p27820 Brassica napus HOM05D000671 ORTHO05D032013 1.2e-11 73.2 68 57.4
BolC6t37948H Brassica oleracea HOM05D000671 ORTHO05D032013 1.2e-11 73.2 68 57.4
CBR_g20173 Chara braunii HOM05D000671 ORTHO05D004414 1.2e-11 73.2 108 45.4
QL09p035226 Quercus lobata HOM05D000671 ORTHO05D004414 1.2e-11 73.2 126 44.4
Sabra05G0133800 Salix brachista HOM05D000671 ORTHO05D004414 3.1e-10 68.6 141 39.0
Sabra02G0066000 Salix brachista HOM05D000671 ORTHO05D004414 1.5e-09 66.2 147 37.4
Lalb_Chr10g0101761 Lupinus albus HOM05D000671 ORTHO05D004414 2.9e-08 62.0 170 32.9
SMO174G0177 Selaginella moellendorffii HOM05D000671 ORTHO05D004414 3.2e-07 58.5 110 39.1
Nitab4.5_0000633g0200 Nicotiana tabacum HOM05D000671 ORTHO05D004414 4.2e-07 58.2 77 50.6


User provided reference genes

Program Settings