Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 5.1e-293 1010.4 517 100.0
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.0e-233 812.4 530 82.5
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 1.8e-157 560.1 559 64.6
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 8.4e-155 551.2 555 63.2
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 1.5e-148 530.4 563 59.9
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 7.4e-127 458.4 465 61.9
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 6.3e-126 455.3 552 53.4
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.0e-124 450.3 563 51.5
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 3.8e-123 446.0 546 52.7
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.2e-122 443.0 547 52.8
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 1.5e-111 407.5 549 47.7
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 9.7e-111 404.8 554 48.0
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 1.7e-107 394.0 553 47.6
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.1e-106 391.3 535 47.7
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 2.7e-105 386.7 552 47.1
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 1.0e-104 384.8 548 47.1
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 1.0e-104 384.8 450 51.1
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.6e-103 380.2 539 46.4
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 5.7e-103 379.0 548 46.5
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 7.5e-103 378.6 551 47.0
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 2.8e-102 376.7 545 46.1
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.4e-101 374.4 547 46.6
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 1.4e-101 374.4 547 46.6
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 9.1e-101 371.7 549 45.5
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 2.0e-100 370.5 518 46.1
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 5.9e-100 369.0 570 44.0
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 1.0e-99 368.2 519 46.2
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.3e-99 367.9 549 45.9
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.8e-99 366.3 547 45.7
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 6.5e-99 365.5 567 45.3
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 6.5e-99 365.5 548 44.9
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 8.6e-99 365.2 556 45.0
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 8.6e-99 365.2 552 46.0
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 1.9e-98 364.0 548 44.7
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.9e-98 364.0 528 46.6
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 3.3e-98 363.2 519 46.2
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 5.5e-98 362.5 448 50.9
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.6e-97 360.9 567 44.8
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 4.7e-97 359.4 553 44.7
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 4.7e-97 359.4 553 44.5
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 6.1e-97 359.0 517 47.2
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 8.0e-97 358.6 555 45.2
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.4e-96 357.8 544 45.6
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 2.3e-96 357.1 554 45.3
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 8.9e-96 355.1 515 46.6
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 8.9e-96 355.1 552 44.7
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 2.6e-95 353.6 552 44.6
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 2.6e-95 353.6 558 45.3
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 2.6e-95 353.6 559 44.0
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 3.4e-95 353.2 439 50.8
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 3.4e-95 353.2 553 45.0
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 5.7e-95 352.4 552 44.7
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 2.2e-94 350.5 551 44.5
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 2.8e-94 350.1 510 46.5
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 2.4e-93 347.1 551 45.0
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 5.4e-93 345.9 580 42.9
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 7.0e-93 345.5 579 43.2
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 7.0e-93 345.5 467 48.2
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 9.2e-93 345.1 556 43.3
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 1.2e-92 344.7 526 43.5
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 1.2e-92 344.7 565 43.2
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 2.7e-92 343.6 547 44.6
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 5.9e-92 342.4 547 44.6
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 1.3e-91 341.3 536 45.0
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.0e-91 339.3 545 44.0
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 5.6e-90 335.9 438 47.5
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 2.8e-89 333.6 549 43.9
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 3.6e-89 333.2 402 51.2
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 3.6e-89 333.2 426 50.5
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 1.0e-88 331.6 555 42.2
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 1.4e-88 331.3 439 48.5
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 1.8e-88 330.9 453 47.2
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 8.9e-88 328.6 385 52.5
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 1.2e-87 328.2 458 46.7
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 1.2e-87 328.2 550 42.9
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 1.2e-87 328.2 556 41.5
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 1.5e-87 327.8 459 46.6
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 1.5e-87 327.8 442 49.1
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 7.5e-87 325.5 436 47.9
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 2.2e-86 323.9 459 46.8
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 6.4e-86 322.4 460 47.4
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.9e-85 320.9 441 47.6
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 2.4e-85 320.5 458 45.9
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 3.2e-85 320.1 434 47.2
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 4.1e-85 319.7 385 50.9
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 5.4e-85 319.3 414 48.6
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 7.0e-85 318.9 459 46.6
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.6e-84 317.8 400 49.2
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 2.0e-84 317.4 439 49.4
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 2.0e-84 317.4 384 51.3
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 3.5e-84 316.6 438 47.3
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 4.6e-84 316.2 456 45.6
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 6.0e-84 315.8 456 46.3
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 6.6e-83 312.4 445 47.6
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-82 311.6 458 46.7
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 2.5e-82 310.5 445 46.1
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 9.5e-82 308.5 464 45.3
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 2.8e-81 307.0 459 45.5
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 8.0e-81 305.4 390 50.3
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.4e-80 304.7 452 43.4
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 2.9e-78 297.0 458 45.0
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 2.1e-76 290.8 417 45.8
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 6.6e-75 285.8 387 47.0
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 3.3e-74 283.5 551 39.6
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 6.2e-73 279.3 350 49.7
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 6.8e-72 275.8 522 39.5
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 2.7e-68 263.8 330 49.4
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 7.8e-68 262.3 354 46.6
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 2.5e-66 257.3 441 39.7
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 4.3e-66 256.5 397 40.3
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 5.6e-66 256.1 552 38.2
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 7.3e-66 255.8 355 46.2
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 1.4e-64 251.5 188 68.1
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 4.9e-62 243.0 538 37.9
CAN.G803.16 Capsicum annuum HOM05D004117 ORTHO05D004520 4.2e-61 240.0 152 81.6
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 6.0e-60 236.1 163 74.8
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 2.3e-59 234.2 174 70.1
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.9e-58 231.1 419 38.7
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 9.6e-58 228.8 163 73.0
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 4.0e-56 223.4 441 38.3
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 6.9e-56 222.6 290 49.7
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 6.9e-56 222.6 162 72.2
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 4.4e-55 219.9 356 38.8
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 9.9e-55 218.8 154 71.4
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 1.1e-53 215.3 163 70.6
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 3.5e-52 210.3 346 39.6
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 2.3e-51 207.6 155 67.1
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 1.6e-49 201.4 353 39.9
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 9.0e-48 195.7 537 35.2
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 1.9e-45 188.0 152 66.4
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 1.0e-43 182.2 294 44.2
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.3e-42 176.8 121 75.2
SalBow1G6942 Salvia bowleyana HOM05D004117 ORTHO05D004520 7.4e-42 176.0 121 75.2
SalBow6G2076 Salvia bowleyana HOM05D004117 ORTHO05D004520 7.4e-42 176.0 121 75.2
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 1.4e-40 171.8 303 40.6
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 3.4e-39 167.2 531 34.5
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 7.6e-39 166.0 318 40.6
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 6.4e-38 162.9 313 41.5
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 1.1e-34 152.1 324 39.2
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 6.2e-33 146.4 314 40.8
Ciclev10017482m.g Citrus clementina HOM05D004117 ORTHO05D004520 1.4e-32 145.2 189 50.3
SalBow1G0209 Salvia bowleyana HOM05D004117 ORTHO05D004520 5.8e-31 139.8 92 80.4
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 1.3e-30 138.7 351 30.8
Ciclev10014464m.g Citrus clementina HOM05D000038 ORTHO05D000423 3.2e-29 134.0 110 68.2
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 2.7e-28 131.0 139 52.5
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 6.0e-28 129.8 105 61.0
GSVIVG01020778001 Vitis vinifera HOM05D000038 ORTHO05D000423 7.9e-28 129.4 107 66.4
FvH4_6g27890 Fragaria vesca HOM05D004117 ORTHO05D004520 4.3e-26 123.6 242 38.4
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 3.7e-25 120.6 376 30.9
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 9.0e-24 115.9 342 28.1
Lsat_1_v5_gn_3_102840 Lactuca sativa HOM05D001936 ORTHO05D004520 2.0e-23 114.8 77 77.9
Thecc.07G168800 Theobroma cacao HOM05D004117 ORTHO05D004520 1.0e-19 102.4 90 61.1
Haze_13437 Corylus avellana HOM05D013182 ORTHO05D004520 6.3e-17 93.2 80 58.8
MCO15G049 Micromonas commoda HOM05D004117 ORTHO05D004520 4.1e-16 90.5 314 27.1
Zm00001eb358520 Zea mays HOM05D004117 ORTHO05D004520 4.1e-16 90.5 108 53.7
arahy.Tifrunner.gnm1.ann1.K0K9CW Arachis hypogaea HOM05D012221 ORTHO05D004520 1.5e-15 88.6 69 63.8
CSS0019423 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 4.5e-15 87.0 76 55.3
QL08p042731 Quercus lobata HOM05D004117 ORTHO05D004520 1.3e-14 85.5 61 75.4
HanXRQChr04g0105921 Helianthus annuus HOM05D004117 ORTHO05D004520 2.2e-14 84.7 102 45.1
Zm00001eb317340 Zea mays HOM05D004117 ORTHO05D004520 6.5e-14 83.2 75 65.3
Pp3c13_2890 Physcomitrium patens HOM05D004117 ORTHO05D004520 4.2e-13 80.5 101 46.5
CBR_g22972 Chara braunii HOM05D000004 ORTHO05D000002 9.4e-13 79.3 358 24.9
unitig_62.g23112 Utricularia gibba HOM05D004117 ORTHO05D004520 2.0e-10 71.6 172 34.3
CSS0038404 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.6e-10 71.2 88 45.5
arahy.Tifrunner.gnm1.ann1.DYUH96 Arachis hypogaea HOM05D009422 ORTHO05D004520 4.4e-10 70.5 57 63.2
QL08p042825 Quercus lobata HOM05D000013 ORTHO05D000689 3.1e-08 64.3 32 84.4
Os06g0153200 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 9.1e-08 62.8 86 43.0
SMO271G0073 Selaginella moellendorffii HOM05D000753 ORTHO05D006293 4.5e-07 60.5 340 24.7


User provided reference genes

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