Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000978g0160 Nicotiana tabacum HOM05D003040 ORTHO05D003443 2.5e-44 182.2 125 100.0
Nitab4.5_0006519g0010 Nicotiana tabacum HOM05D003040 ORTHO05D003443 9.8e-41 170.2 125 96.8
Peaxi162Scf00378g00633 Petunia axillaris HOM05D003040 ORTHO05D003443 4.2e-36 154.8 125 61.6
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.3e-29 133.3 168 47.6
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 1.2e-27 126.7 167 46.7
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 3.6e-27 125.2 162 45.7
Nitab4.5_0006213g0060 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.4e-23 113.2 121 53.7
Peaxi162Scf00286g00236 Petunia axillaris HOM05D003040 ORTHO05D003443 1.4e-23 113.2 126 52.4
CSS0003515 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 3.2e-23 112.1 63 76.2
Cc03_g10850 Coffea canephora HOM05D003040 ORTHO05D003443 9.2e-23 110.5 58 82.8
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 3.5e-22 108.6 63 74.6
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 1.3e-21 106.7 58 81.0
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 1.7e-21 106.3 64 73.4
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 2.3e-21 105.9 61 78.7
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 3.9e-21 105.1 61 77.0
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 3.9e-21 105.1 61 77.0
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 6.6e-21 104.4 56 80.4
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 2.5e-20 102.4 57 82.5
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 3.3e-20 102.1 54 83.3
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 5.6e-20 101.3 65 67.7
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 1.2e-19 100.1 64 73.4
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.1e-19 99.4 58 75.9
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 2.8e-19 99.0 58 74.1
EL10Ac3g07394 Beta vulgaris HOM05D003040 ORTHO05D003443 6.2e-19 97.8 107 50.5
PGSC0003DMG400021621 Solanum tuberosum HOM05D003040 ORTHO05D003443 6.2e-19 97.8 57 78.9
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 8.0e-19 97.4 72 68.1
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 1.4e-18 96.7 55 81.8
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 4.0e-18 95.1 66 66.7
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 5.2e-18 94.7 59 76.3
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 6.8e-18 94.4 57 73.7
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 1.2e-17 93.6 69 65.2
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 1.5e-17 93.2 63 69.8
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 1.5e-17 93.2 61 68.9
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 2.0e-17 92.8 64 71.9
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 2.0e-17 92.8 61 67.2
ECA238G0291 Erigeron canadensis HOM05D003040 ORTHO05D003443 2.0e-17 92.8 57 68.4
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 2.0e-17 92.8 58 72.4
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 2.6e-17 92.4 61 67.2
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 2.6e-17 92.4 54 72.2
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 2.6e-17 92.4 59 69.5
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 2.6e-17 92.4 63 63.5
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 3.4e-17 92.0 61 65.6
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 3.4e-17 92.0 54 72.2
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 3.4e-17 92.0 63 66.7
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 4.4e-17 91.7 57 70.2
Glyma.18G283500 Glycine max HOM05D003040 ORTHO05D003443 4.4e-17 91.7 66 69.7
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 5.8e-17 91.3 58 67.2
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 9.8e-17 90.5 60 70.0
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 2.9e-16 89.0 53 77.4
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 2.9e-16 89.0 53 71.7
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 3.7e-16 88.6 54 74.1
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 3.7e-16 88.6 69 62.3
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 6.4e-16 87.8 53 77.4
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 6.4e-16 87.8 58 63.8
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 1.1e-15 87.0 70 62.9
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 1.4e-15 86.7 54 72.2
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 5.4e-15 84.7 46 73.9
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 1.2e-14 83.6 58 63.8
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 1.6e-14 83.2 73 58.9
Lj3C387T5 Lonicera japonica HOM05D003040 ORTHO05D003443 1.6e-14 83.2 73 58.9
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 2.7e-14 82.4 56 71.4
Sabra13G0077300 Salix brachista HOM05D003040 ORTHO05D003443 3.5e-14 82.0 59 62.7
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 6.0e-14 81.3 60 71.7
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 6.0e-14 81.3 59 64.4
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 1.0e-13 80.5 54 66.7
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 1.3e-13 80.1 52 67.3
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 1.7e-13 79.7 59 69.5
ClCG08G003690 Citrullus lanatus HOM05D003040 ORTHO05D003443 2.3e-13 79.3 61 72.1
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 3.0e-13 79.0 58 56.9
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 3.0e-13 79.0 58 72.4
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 3.9e-13 78.6 65 61.5
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 6.6e-13 77.8 63 61.9
Solyc09g098425.1 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.1e-12 77.0 52 73.1
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 1.5e-12 76.6 40 77.5
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 1.5e-12 76.6 49 69.4
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.5e-12 76.6 67 55.2
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 2.5e-12 75.9 71 59.2
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 3.3e-12 75.5 58 65.5
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 4.3e-12 75.1 65 60.0
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 4.3e-12 75.1 65 60.0
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 5.6e-12 74.7 59 57.6
SalBow6G3639 Salvia bowleyana HOM05D003040 ORTHO05D003443 1.2e-11 73.6 58 62.1
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 2.8e-11 72.4 65 56.9
Cfa006269 Carpinus fangiana HOM05D003040 ORTHO05D003443 3.6e-11 72.0 69 52.2
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 4.7e-11 71.6 63 55.6
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 4.7e-11 71.6 58 63.8
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.7e-11 71.6 58 63.8
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.7e-11 71.6 58 63.8
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.7e-11 71.6 58 63.8
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.7e-11 71.6 58 63.8
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 6.2e-11 71.2 70 52.9
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 6.2e-11 71.2 56 64.3
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 8.1e-11 70.9 65 50.8
MSTRG.328 Avicennia marina HOM05D003040 ORTHO05D003443 1.8e-10 69.7 57 56.1
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 2.3e-10 69.3 61 57.4
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 2.3e-10 69.3 57 61.4
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 2.3e-10 69.3 56 55.4
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.1e-10 68.9 58 62.1
Lsat_1_v5_gn_1_69541 Lactuca sativa HOM05D003040 ORTHO05D003443 4.0e-10 68.6 60 60.0
Sopen09g036360 Solanum pennellii HOM05D003040 ORTHO05D003443 6.8e-10 67.8 53 71.7
PSO675G7126 Papaver somniferum HOM05D003040 ORTHO05D003443 2.0e-09 66.2 89 48.3
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 3.4e-09 65.5 36 75.0
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 3.4e-09 65.5 56 60.7
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 4.4e-09 65.1 55 63.6
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 5.8e-09 64.7 53 56.6
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 7.5e-09 64.3 53 56.6
MSTRG.8213 Avicennia marina HOM05D003040 ORTHO05D003443 1.3e-08 63.5 57 50.9
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 1.7e-08 63.2 38 73.7
PSO017G5902 Papaver somniferum HOM05D003040 ORTHO05D003443 2.2e-08 62.8 86 47.7
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.7e-08 62.0 80 47.5
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.7e-08 62.0 80 47.5
EL10Ac4g09973 Beta vulgaris HOM05D003040 ORTHO05D003443 4.9e-08 61.6 66 47.0
HanXRQChr01g0021741 Helianthus annuus HOM05D003040 ORTHO05D003443 6.4e-08 61.2 51 54.9
Migut.F01874 Erythranthe guttata HOM05D003040 ORTHO05D003443 8.3e-08 60.8 57 49.1
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 1.1e-07 60.5 70 48.6
Migut.F02119 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.9e-07 59.7 58 55.2
SalBow6G3188 Salvia bowleyana HOM05D003040 ORTHO05D003443 1.9e-07 59.7 57 49.1
Medtr7g079870 Medicago truncatula HOM05D003040 ORTHO05D003443 2.4e-07 59.3 48 56.2
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 5.4e-07 58.2 34 67.6
Os11g0472600 Oryza sativa ssp. japonica HOM05D003040 ORTHO05D003443 5.4e-07 58.2 54 48.1
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 5.4e-07 58.2 43 60.5
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 1.2e-06 57.0 63 50.8
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 1.6e-06 56.6 62 50.0
Lj1g0018351 Lotus japonicus HOM05D003040 ORTHO05D003443 2.1e-06 56.2 52 53.8
Cc09_g03590 Coffea canephora HOM05D003040 ORTHO05D003443 6.0e-06 54.7 54 57.4
HPP92_025248 Vanilla planifolia HOM05D003040 ORTHO05D003443 6.0e-06 54.7 64 45.3
Ca_07978_v3 Cicer arietinum L. HOM05D003040 ORTHO05D003443 7.8e-06 54.3 41 58.5


User provided reference genes

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