Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.2e-235 817.4 423 100.0
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.8e-110 403.7 435 59.3
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.3e-108 397.5 435 58.4
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.7e-108 397.1 435 58.4
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 5.0e-97 359.0 415 55.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.9e-96 357.1 435 52.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 1.7e-92 344.0 440 51.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 2.8e-92 343.2 435 51.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.8e-92 343.2 435 51.3
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 3.7e-92 342.8 435 50.3
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 6.3e-92 342.0 435 50.6
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 2.4e-91 340.1 434 50.2
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.1e-91 339.7 436 50.7
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.0e-90 337.0 435 49.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.7e-90 336.7 436 50.2
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.7e-90 336.7 435 49.7
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 3.5e-90 336.3 435 50.6
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 5.9e-90 335.5 435 49.7
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.3e-89 334.3 433 49.0
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.1e-88 331.3 435 49.4
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.1e-88 331.3 435 49.4
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.5e-88 330.1 435 49.9
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 7.3e-88 328.6 435 48.7
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 9.5e-88 328.2 395 53.2
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.2e-87 327.8 435 48.0
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.2e-87 327.8 435 49.2
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.6e-87 327.4 395 53.4
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.8e-87 326.6 435 49.7
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.8e-87 326.6 435 49.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 4.7e-87 325.9 433 48.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 4.7e-87 325.9 435 49.4
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.1e-87 325.5 399 53.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 8.0e-87 325.1 423 49.4
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.0e-86 324.7 437 49.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.0e-86 324.7 428 48.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 1.0e-86 324.7 396 53.0
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 4.0e-86 322.8 433 47.3
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 6.8e-86 322.0 435 48.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.2e-85 321.2 438 48.6
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.5e-85 320.9 435 48.0
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.5e-85 320.9 434 48.8
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.5e-85 320.9 430 49.3
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.5e-85 320.9 424 48.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.0e-85 320.5 435 49.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 3.4e-85 319.7 397 51.4
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 4.4e-85 319.3 436 48.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 4.4e-85 319.3 393 51.1
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.8e-85 318.9 435 47.4
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.5e-85 318.5 435 47.4
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.3e-84 317.8 413 48.9
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.7e-84 317.4 387 51.2
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.2e-84 317.0 383 50.9
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.2e-84 317.0 396 53.0
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 2.9e-84 316.6 436 47.9
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 4.9e-84 315.8 395 52.2
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-83 314.7 435 47.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.1e-83 314.7 435 47.6
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.4e-83 314.3 393 50.4
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.4e-83 314.3 397 50.9
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.9e-83 313.9 397 51.1
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.9e-83 313.9 395 51.4
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.4e-83 313.5 393 50.1
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.4e-83 313.5 435 46.9
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 3.2e-83 313.2 393 50.1
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 4.1e-83 312.8 435 46.4
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 5.4e-83 312.4 397 50.9
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 5.4e-83 312.4 397 50.9
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 7.0e-83 312.0 397 50.9
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 9.2e-83 311.6 437 47.6
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.2e-82 311.2 396 51.0
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.6e-82 310.8 397 50.6
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.6e-82 310.8 397 50.6
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.6e-82 310.8 397 50.6
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.6e-82 310.8 434 47.5
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.6e-82 310.8 433 46.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.7e-82 310.1 435 47.1
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 2.7e-82 310.1 437 47.8
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.7e-82 310.1 395 51.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 6.0e-82 308.9 435 46.2
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.8e-82 308.5 395 50.4
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.3e-81 307.8 395 51.6
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.7e-81 307.4 395 50.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 3.9e-81 306.2 439 46.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 6.6e-81 305.4 386 50.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.9e-80 303.9 406 49.5
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.3e-80 303.1 413 49.9
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.6e-79 299.7 406 47.8
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 8.0e-79 298.5 503 43.7
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 8.0e-79 298.5 429 46.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.3e-78 297.0 390 48.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 4.0e-78 296.2 408 48.8
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.5e-77 294.3 389 49.6
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 9.8e-77 291.6 458 45.4
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.0e-73 281.6 428 44.9
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 6.6e-73 278.9 407 46.7
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 6.6e-73 278.9 386 48.2
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.5e-72 277.7 402 47.0
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.9e-72 277.3 399 45.6
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.8e-71 273.5 348 49.4
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.1e-70 270.0 362 49.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 6.8e-70 268.9 440 44.5
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 8.9e-70 268.5 345 52.8
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.5e-69 267.7 308 52.9
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 3.2e-67 260.0 389 45.8
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 6.6e-65 252.3 395 45.8
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.1e-64 251.5 393 45.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.2e-62 242.7 375 44.8
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.2e-60 237.3 395 43.5
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 8.4e-60 235.3 140 84.3
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.9e-59 234.2 395 43.3
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.9e-59 234.2 417 41.5
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 8.7e-57 225.3 140 82.1
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.1e-55 220.7 470 39.6
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-54 218.4 140 80.0
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 9.0e-54 215.3 406 40.9
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 3.9e-49 199.9 161 64.0
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 6.6e-49 199.1 145 74.5
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 7.3e-48 195.7 362 39.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.0e-41 173.7 122 75.4
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 9.0e-38 162.2 124 75.8
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.0e-37 161.0 304 40.8
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 3.4e-37 160.2 327 37.3
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 9.3e-35 152.1 91 83.5
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.6e-34 151.4 312 39.1
Nitab4.5_0012260g0050 Nicotiana tabacum HOM05D008793 ORTHO05D010994 2.7e-34 150.6 74 94.6
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.3e-31 141.7 202 46.5
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 9.0e-30 135.6 200 43.0
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.5e-29 134.8 280 37.1
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 6.5e-28 129.4 346 34.7
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.6e-26 124.8 347 30.3
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.3e-25 120.9 109 61.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.3e-25 120.9 125 60.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.3e-25 120.9 343 30.6
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.8e-23 114.0 135 55.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.2e-21 108.6 70 81.4
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 4.5e-21 106.7 310 31.3
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.4e-19 101.7 345 27.2
Nitab4.5_0000307g0310 Nicotiana tabacum HOM05D011634 ORTHO05D012151 1.2e-18 98.6 56 83.9
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 3.6e-18 97.1 68 69.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 3.7e-15 87.0 74 63.5
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.2e-13 82.0 69 59.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 3.2e-11 73.9 106 50.9
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.5e-11 73.2 95 49.5
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.0e-09 68.9 42 90.5
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.0e-08 64.7 35 97.1


User provided reference genes

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