Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.4e-84 316.2 159 100.0
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.5e-81 304.3 159 96.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 8.3e-69 263.8 154 85.1
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 7.0e-68 260.8 155 83.2
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 2.7e-67 258.8 155 82.6
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 4.5e-67 258.1 156 82.7
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.0e-58 230.3 138 85.5
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.0e-43 179.5 130 71.5
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.6e-43 178.3 130 71.5
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 7.8e-43 177.6 138 68.8
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 8.3e-37 157.5 130 65.4
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.6e-35 153.3 130 60.0
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.6e-33 144.8 145 55.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.6e-33 144.8 131 57.3
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 6.2e-32 141.4 163 48.5
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 8.1e-32 141.0 162 47.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.4e-31 140.2 169 49.7
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.4e-31 140.2 147 50.3
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 5.2e-31 138.3 155 53.5
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 6.8e-31 137.9 145 50.3
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.2e-30 137.1 161 49.1
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 3.4e-30 135.6 146 54.1
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 1.3e-29 133.7 127 63.0
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 1.3e-29 133.7 158 50.6
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 4.9e-29 131.7 153 50.3
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.4e-28 130.2 151 51.0
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.4e-28 129.4 150 52.0
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.1e-28 128.6 159 49.1
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.2e-27 127.1 143 47.6
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.1e-27 126.3 156 47.4
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.7e-27 125.9 146 50.7
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 3.5e-27 125.6 154 48.7
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.0e-27 124.8 151 47.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 7.8e-27 124.4 164 45.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 7.8e-27 124.4 157 49.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.0e-26 124.0 149 49.0
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.0e-26 124.0 144 50.7
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.0e-26 124.0 125 55.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.3e-26 123.6 160 45.6
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-26 123.2 151 47.0
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.3e-26 122.9 118 60.2
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.3e-26 122.9 165 44.2
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.0e-26 122.5 146 47.3
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.0e-26 122.5 146 47.3
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 3.0e-26 122.5 123 55.3
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 3.9e-26 122.1 153 47.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.9e-26 122.1 140 49.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.1e-26 121.7 151 46.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.1e-26 121.7 138 47.8
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 5.1e-26 121.7 138 46.4
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 6.6e-26 121.3 144 49.3
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.1e-25 120.6 132 53.8
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-25 120.6 157 44.6
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.5e-25 119.4 165 44.2
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 3.3e-25 119.0 146 46.6
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.3e-25 118.6 124 51.6
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 4.3e-25 118.6 149 46.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.6e-25 118.2 152 47.4
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 7.3e-25 117.9 153 46.4
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.6e-25 117.5 147 45.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.2e-24 117.1 141 48.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.6e-24 116.7 155 45.8
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.8e-24 115.9 139 51.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.1e-23 114.0 165 46.1
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.4e-23 113.6 147 44.9
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.4e-23 113.6 122 51.6
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.4e-23 113.6 122 51.6
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.8e-23 113.2 125 47.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.4e-23 112.8 156 45.5
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.4e-23 112.8 165 44.8
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.4e-23 112.8 136 50.0
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 3.1e-23 112.5 159 45.9
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 3.1e-23 112.5 146 41.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.1e-23 112.5 155 43.9
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.0e-23 112.1 141 41.8
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.0e-23 112.1 139 46.8
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 5.2e-23 111.7 131 47.3
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 5.2e-23 111.7 131 49.6
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 6.8e-23 111.3 102 60.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.8e-23 111.3 146 43.8
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 8.9e-23 110.9 139 46.8
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 8.9e-23 110.9 160 44.4
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.2e-22 110.5 145 44.8
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.2e-22 110.5 163 44.8
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.5e-22 110.2 150 46.0
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.5e-22 110.2 157 45.9
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 4.4e-22 108.6 156 47.4
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 4.4e-22 108.6 151 43.7
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 7.6e-22 107.8 118 48.3
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.9e-22 107.5 139 45.3
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.3e-21 107.1 159 43.4
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.9e-21 105.9 101 57.4
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 6.4e-21 104.8 137 46.7
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.4e-20 101.7 159 37.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.4e-20 101.7 159 37.1
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.1e-19 99.8 123 49.6
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.1e-19 99.8 148 45.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 2.7e-19 99.4 156 41.7
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.5e-19 99.0 151 39.7
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.5e-19 99.0 162 38.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 4.6e-19 98.6 132 40.9
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 6.0e-19 98.2 155 40.6
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 6.0e-19 98.2 144 38.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.9e-18 95.5 154 44.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 6.6e-18 94.7 142 40.1
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.1e-17 94.0 154 40.3
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.1e-17 94.0 154 40.3
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.1e-17 94.0 141 41.1
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.5e-17 93.6 144 38.2
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.9e-17 93.2 134 44.0
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.5e-17 92.8 157 39.5
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.3e-17 92.4 154 37.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 4.3e-17 92.0 141 37.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 5.6e-17 91.7 157 39.5
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 5.6e-17 91.7 141 38.3
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 7.3e-17 91.3 157 39.5
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 9.6e-17 90.9 159 40.3
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 9.6e-17 90.9 159 40.3
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-16 90.5 141 37.6
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.3e-16 90.5 141 37.6
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.1e-16 89.7 142 40.8
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 4.8e-16 88.6 157 38.2
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 1.4e-15 87.0 152 36.8
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-15 87.0 152 36.8
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 1.4e-15 87.0 152 36.8
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.4e-15 86.3 132 37.1
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.1e-15 85.9 139 38.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 4.0e-15 85.5 143 37.1
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 6.9e-15 84.7 98 45.9
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-13 80.5 155 34.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.2e-12 75.9 93 51.6
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 4.2e-12 75.5 153 34.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 9.3e-12 74.3 129 41.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.6e-11 73.6 58 65.5
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.5e-11 72.4 75 53.3
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 4.6e-11 72.0 99 47.5
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 6.0e-11 71.6 67 58.2
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.3e-10 70.5 119 37.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.3e-09 65.5 155 34.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 7.3e-09 64.7 110 37.3
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.3e-08 63.9 138 34.1
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 3.6e-08 62.4 91 42.9
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.1e-07 60.8 86 45.3
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 1.1e-07 60.8 94 38.3
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 1.1e-07 60.8 137 31.4
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 3.1e-07 59.3 96 41.7
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 3.1e-07 59.3 110 39.1
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 5.3e-07 58.5 96 40.6
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 5.3e-07 58.5 153 31.4
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 6.9e-07 58.2 105 35.2
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 9.0e-07 57.8 85 47.1
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 3.4e-06 55.8 122 34.4
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 7.6e-06 54.7 85 44.7
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 9.9e-06 54.3 81 35.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 9.9e-06 54.3 96 32.3


User provided reference genes

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