Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.2e-73 278.9 138 100.0
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.7e-42 174.5 122 73.8
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 8.3e-41 170.6 120 73.3
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.0e-40 167.5 122 73.0
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.1e-40 167.2 117 75.2
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.5e-39 164.9 110 73.6
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 1.0e-38 163.7 107 75.7
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.2e-38 162.5 99 82.8
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.6e-34 149.1 99 77.8
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.8e-32 142.9 77 92.2
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 1.5e-29 133.3 90 72.2
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 4.9e-25 118.2 95 67.4
Nitab4.5_0007420g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.3e-22 110.2 80 68.8
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 1.8e-19 99.8 92 60.9
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.2e-18 97.1 92 60.9
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 5.8e-18 94.7 92 59.8
PGSC0003DMG400020028 Solanum tuberosum HOM05D007556 ORTHO05D002252 9.8e-18 94.0 122 49.2
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.3e-17 93.6 137 39.4
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.7e-17 93.2 143 42.0
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 3.7e-17 92.0 139 41.7
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 2.4e-16 89.4 163 40.5
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.1e-16 88.6 101 45.5
Solyc07g016215.1 Solanum lycopersicum HOM05D007556 ORTHO05D002252 5.4e-16 88.2 92 52.2
PGSC0003DMG400009559 Solanum tuberosum HOM05D007556 ORTHO05D002252 9.2e-16 87.4 94 54.3
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.7e-15 85.9 140 38.6
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.5e-15 85.5 103 48.5
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.6e-15 85.1 114 46.5
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 4.6e-15 85.1 73 60.3
CiPaw.06G136300 Carya illinoinensis HOM05D007556 ORTHO05D002252 7.8e-15 84.3 135 36.3
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 7.8e-15 84.3 141 36.9
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 7.8e-15 84.3 103 48.5
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.7e-14 83.2 88 48.9
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 3.9e-14 82.0 133 39.1
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 6.6e-14 81.3 104 43.3
Peaxi162Scf00684g00049 Petunia axillaris HOM05D007556 ORTHO05D002252 1.5e-13 80.1 116 46.6
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 1.9e-13 79.7 137 38.7
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 2.5e-13 79.3 122 42.6
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 5.6e-13 78.2 122 41.0
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 7.3e-13 77.8 137 38.0
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 9.5e-13 77.4 135 38.5
PGSC0003DMG400009558 Solanum tuberosum HOM05D007556 ORTHO05D002252 9.5e-13 77.4 84 51.2
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.1e-12 76.3 134 39.6
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.8e-12 75.9 140 37.9
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 4.7e-12 75.1 116 39.7
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 6.2e-12 74.7 105 41.0
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 6.2e-12 74.7 172 33.1
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 6.2e-12 74.7 93 43.0
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 8.1e-12 74.3 115 34.8
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 8.1e-12 74.3 149 37.6
COL.COLO4_25910 Corchorus olitorius HOM05D007556 ORTHO05D002252 8.1e-12 74.3 133 38.3
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 1.1e-11 73.9 108 42.6
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.8e-11 73.2 91 44.0
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.8e-11 73.2 134 36.6
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 2.3e-11 72.8 115 33.9
COL.COLO4_03329 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.3e-11 72.8 144 37.5
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.3e-11 72.8 108 41.7
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-11 72.8 89 42.7
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.1e-11 72.4 115 38.3
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 4.0e-11 72.0 141 35.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 4.0e-11 72.0 113 36.3
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 6.8e-11 71.2 139 34.5
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 8.9e-11 70.9 126 37.3
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 8.9e-11 70.9 91 45.1
Manes.10G047933 Manihot esculenta HOM05D007556 ORTHO05D002252 8.9e-11 70.9 96 43.8
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 1.2e-10 70.5 84 46.4
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 1.2e-10 70.5 85 44.7
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 1.2e-10 70.5 114 40.4
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.5e-10 70.1 89 42.7
RcHm_v2.0_Chr6g0263961 Rosa chinensis HOM05D018529 ORTHO05D016305 1.5e-10 70.1 158 31.6
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.6e-10 69.3 101 46.5
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 3.4e-10 68.9 116 40.5
Peaxi162Scf00684g00330 Petunia axillaris HOM05D058148 ORTHO05D306638 4.4e-10 68.6 112 37.5
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 5.8e-10 68.2 95 38.9
Aqoxy2G01755 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 7.5e-10 67.8 128 36.7
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 9.8e-10 67.4 100 42.0
EL10Ac4g09227 Beta vulgaris HOM05D037403 ORTHO05D002252 1.3e-09 67.0 132 32.6
CiPaw.06G136400 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.3e-09 67.0 118 37.3
COL.COLO4_11794 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.3e-09 67.0 137 35.0
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 1.3e-09 67.0 92 44.6
Prupe.8G099000 Prunus persica HOM05D007556 ORTHO05D002252 2.2e-09 66.2 138 31.9
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 2.9e-09 65.9 120 32.5
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 2.9e-09 65.9 80 48.8
Cc05_g01670 Coffea canephora HOM05D007556 ORTHO05D002252 3.7e-09 65.5 102 43.1
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 6.4e-09 64.7 112 38.4
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.4e-09 64.7 99 37.4
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 8.3e-09 64.3 100 39.0
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.1e-08 63.9 82 43.9
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.1e-08 63.9 89 39.3
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.1e-08 63.9 99 37.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.1e-08 63.9 99 37.4
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.1e-08 63.9 120 34.2
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 1.4e-08 63.5 100 38.0
Cc02_g17690 Coffea canephora HOM05D007556 ORTHO05D002252 2.4e-08 62.8 108 40.7
Medtr4g069810 Medicago truncatula HOM05D010359 ORTHO05D002252 3.2e-08 62.4 140 35.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.1e-08 62.0 88 39.8
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 7.1e-08 61.2 123 35.0
PGR042G3705 Punica granatum HOM05D007556 ORTHO05D002252 7.1e-08 61.2 133 33.1
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 9.2e-08 60.8 95 41.1
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 9.2e-08 60.8 80 46.2
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 9.2e-08 60.8 80 47.5
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 1.2e-07 60.5 84 42.9
AUR62016715 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.6e-07 60.1 90 38.9
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.6e-07 60.1 104 37.5
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.6e-07 60.1 106 36.8
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.6e-07 60.1 104 34.6
SGA_v2.0_scaffold55G19792 Striga asiatica HOM05D007556 ORTHO05D002252 1.6e-07 60.1 93 35.5
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 2.1e-07 59.7 113 36.3
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.1e-07 59.7 92 40.2
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 2.1e-07 59.7 81 38.3
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 2.7e-07 59.3 89 40.4
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 2.7e-07 59.3 103 36.9
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 3.5e-07 58.9 98 35.7
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 4.6e-07 58.5 109 35.8
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 4.6e-07 58.5 99 37.4
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 4.6e-07 58.5 76 44.7
PGR042G1382 Punica granatum HOM05D007556 ORTHO05D002252 4.6e-07 58.5 101 40.6
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.6e-07 58.5 78 37.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 6.0e-07 58.2 127 34.6
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 6.0e-07 58.2 81 44.4
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 6.0e-07 58.2 89 39.3
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 6.0e-07 58.2 89 38.2
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 7.8e-07 57.8 81 39.5
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 7.8e-07 57.8 138 33.3
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.0e-06 57.4 97 39.2
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.0e-06 57.4 74 43.2
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 1.0e-06 57.4 84 38.1
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.3e-06 57.0 77 40.3
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.3e-06 57.0 77 40.3
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.3e-06 57.0 89 38.2
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 1.3e-06 57.0 86 38.4
CAN.G132.4 Capsicum annuum HOM05D007556 ORTHO05D002252 1.7e-06 56.6 59 52.5
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-06 56.6 79 40.5
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.7e-06 56.6 96 37.5
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.7e-06 56.6 91 40.7
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.3e-06 56.2 78 42.3
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.3e-06 56.2 78 42.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 2.3e-06 56.2 99 37.4
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.0e-06 55.8 89 36.0
CANSAT56G4301 Cannabis sativa HOM05D007556 ORTHO05D002252 3.0e-06 55.8 114 37.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.0e-06 55.8 79 40.5
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.0e-06 55.8 79 41.8
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.0e-06 55.8 99 35.4
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 3.0e-06 55.8 86 43.0
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.0e-06 55.8 60 46.7
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 3.9e-06 55.5 78 38.5
TWI79G1510 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 5.1e-06 55.1 129 34.1
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 6.6e-06 54.7 83 41.0
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 6.6e-06 54.7 49 49.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.6e-06 54.7 84 39.3
CANSAT56G0346 Cannabis sativa HOM05D007556 ORTHO05D002252 8.6e-06 54.3 107 36.4
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 8.6e-06 54.3 79 40.5
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 8.6e-06 54.3 99 34.3
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 8.6e-06 54.3 99 34.3
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 8.6e-06 54.3 89 36.0
Lalb_Chr00c44g0412601 Lupinus albus HOM05D032364 ORTHO05D002252 8.6e-06 54.3 90 38.9
SalBow3G2280 Salvia bowleyana HOM05D058371 ORTHO05D350607 8.6e-06 54.3 135 31.1
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 8.6e-06 54.3 78 35.9
TPR.G38150 Trifolium pratense HOM05D010359 ORTHO05D002252 8.6e-06 54.3 82 35.4


User provided reference genes

Program Settings