Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000957g0110 Nicotiana tabacum HOM05D002648 ORTHO05D036899 1.3e-39 166.0 88 100.0
Nitab4.5_0010151g0050 Nicotiana tabacum HOM05D002648 ORTHO05D036899 7.1e-38 160.2 88 96.6
CAN.G1495.6 Capsicum annuum HOM05D002648 ORTHO05D002899 8.2e-18 93.6 50 92.0
PGSC0003DMG400018755 Solanum tuberosum HOM05D002648 ORTHO05D002899 1.1e-17 93.2 50 92.0
Solyc07g006910.4 Solanum lycopersicum HOM05D002648 ORTHO05D002899 2.4e-17 92.0 50 90.0
Sopen07g003010 Solanum pennellii HOM05D002648 ORTHO05D002899 2.4e-17 92.0 50 90.0
Peaxi162Scf01566g00024 Petunia axillaris HOM05D002648 ORTHO05D002899 1.5e-16 89.4 50 88.0
Oeu009078.1 Olea europaea HOM05D002648 ORTHO05D002899 5.0e-15 84.3 50 86.0
MSTRG.19723 Avicennia marina HOM05D002648 ORTHO05D002899 1.1e-14 83.2 50 80.0
Migut.J01507 Erythranthe guttata HOM05D002648 ORTHO05D002899 2.7e-13 78.6 50 74.0
MSTRG.6243 Avicennia marina HOM05D002648 ORTHO05D002899 6.1e-13 77.4 50 76.0
Lj5A611G51 Lonicera japonica HOM05D002648 ORTHO05D002899 6.1e-13 77.4 50 78.0
Lj5A614G13 Lonicera japonica HOM05D002648 ORTHO05D002899 6.1e-13 77.4 50 78.0
SGA_v2.0_scaffold66G22439 Striga asiatica HOM05D000043 ORTHO05D000600 1.0e-12 76.6 52 71.2
SalBow6G3459 Salvia bowleyana HOM05D002648 ORTHO05D002899 1.8e-12 75.9 50 72.0
Cc06_g12950 Coffea canephora HOM05D002648 ORTHO05D002899 6.7e-12 73.9 50 78.0
SGA_v2.0_scaffold66G22440 Striga asiatica HOM05D002648 ORTHO05D002899 1.1e-11 73.2 50 72.0
Hma1.2p1_0726F.1_g209010 Hydrangea macrophylla HOM05D002648 ORTHO05D002899 2.5e-11 72.0 50 76.0
vmacro20838 Vaccinium macrocarpon HOM05D002648 ORTHO05D002899 3.3e-11 71.6 50 74.0
TAR626G1427 Trochodendron aralioides HOM05D002648 ORTHO05D002899 7.4e-11 70.5 50 70.0
GSVIVG01029267001 Vitis vinifera HOM05D002648 ORTHO05D002899 1.3e-10 69.7 50 72.0
Sed0001096 Sechium edule HOM05D002648 ORTHO05D002899 1.7e-10 69.3 61 63.9
unitig_744.g24141 Utricularia gibba HOM05D002648 ORTHO05D002899 1.7e-10 69.3 50 68.0
Rhsim01G0120700 Rhododendron simsii HOM05D002648 ORTHO05D002899 2.2e-10 68.9 50 72.0
CsaV3_1G032020 Cucumis sativus L. HOM05D002648 ORTHO05D002899 2.8e-10 68.6 61 62.3
Dinv41201 Davidia involucrata HOM05D002648 ORTHO05D002899 4.8e-10 67.8 52 75.0
ClCG06G013800 Citrullus lanatus HOM05D002648 ORTHO05D002899 6.3e-10 67.4 61 62.3
Nn8g40640 Nelumbo nucifera HOM05D002648 ORTHO05D002899 6.3e-10 67.4 50 66.0
Sed0011080 Sechium edule HOM05D002648 ORTHO05D002899 6.3e-10 67.4 61 60.7
CSS0035618 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 1.1e-09 66.6 50 72.0
MBI16_g09346_MAGBIO Magnolia biondii HOM05D002648 ORTHO05D002899 1.1e-09 66.6 50 64.0
PSO063G5866 Papaver somniferum HOM05D002648 ORTHO05D002899 1.1e-09 66.6 50 66.0
PSO170G2221 Papaver somniferum HOM05D002648 ORTHO05D002899 1.1e-09 66.6 50 66.0
Aqoxy23s012 Aquilegia oxysepala HOM05D002648 ORTHO05D002899 2.4e-09 65.5 50 62.0
Aqoxy7G02911 Aquilegia oxysepala HOM05D002648 ORTHO05D002899 2.4e-09 65.5 50 62.0
HPP92_017130 Vanilla planifolia HOM05D002648 ORTHO05D002899 5.3e-09 64.3 61 59.0
VMungo1309G2942 Vigna mungo HOM05D002648 ORTHO05D002899 5.3e-09 64.3 61 55.7
PSO541G0441 Papaver somniferum HOM05D002648 ORTHO05D002899 9.1e-09 63.5 50 64.0
PSO675G1903 Papaver somniferum HOM05D002648 ORTHO05D002899 9.1e-09 63.5 50 64.0
CANSAT11G1102 Cannabis sativa HOM05D002648 ORTHO05D002899 1.2e-08 63.2 61 55.7
AUR62027429 Chenopodium quinoa HOM05D002648 ORTHO05D002899 1.5e-08 62.8 50 64.0
AUR62031266 Chenopodium quinoa HOM05D002648 ORTHO05D002899 1.5e-08 62.8 50 64.0
Glyma.15G168000 Glycine max HOM05D002648 ORTHO05D002899 1.5e-08 62.8 61 52.5
FAN21G1517 Fragaria x ananassa HOM05D002648 ORTHO05D002899 2.0e-08 62.4 61 55.7
ATR0787G212 Amborella trichopoda HOM05D002648 ORTHO05D002899 2.6e-08 62.0 61 55.7
Cpa.g.sc115.57 Carica papaya HOM05D002648 ORTHO05D002899 2.6e-08 62.0 61 55.7
Lj6g0004640 Lotus japonicus HOM05D002648 ORTHO05D002899 2.6e-08 62.0 61 52.5
arahy.Tifrunner.gnm1.ann1.40AFZ3 Arachis hypogaea HOM05D002648 ORTHO05D002899 3.4e-08 61.6 61 54.1
EL10Ac8g19293 Beta vulgaris HOM05D002648 ORTHO05D002899 3.4e-08 61.6 50 62.0
TAR624G0939 Trochodendron aralioides HOM05D002648 ORTHO05D002899 3.4e-08 61.6 50 58.0
unitig_21.g20653 Utricularia gibba HOM05D002648 ORTHO05D002899 3.4e-08 61.6 50 64.0
ECA236G3796 Erigeron canadensis HOM05D002648 ORTHO05D002899 4.5e-08 61.2 50 70.0
HanXRQChr05g0139881 Helianthus annuus HOM05D002648 ORTHO05D002899 4.5e-08 61.2 50 70.0
Glyma.17G057400 Glycine max HOM05D002648 ORTHO05D002899 7.7e-08 60.5 61 49.2
Gohir.A04G005600 Gossypium hirsutum HOM05D002648 ORTHO05D002899 7.7e-08 60.5 61 54.1
HanXRQChr11g0334401 Helianthus annuus HOM05D002648 ORTHO05D002899 7.7e-08 60.5 50 60.0
LjContig00081g0022712 Lotus japonicus HOM05D002648 ORTHO05D002899 7.7e-08 60.5 61 54.1
SEGI_12861 Sequoiadendron giganteum HOM05D002648 ORTHO05D002899 7.7e-08 60.5 50 64.0
MSTRG.14499 Avicennia marina HOM05D002648 ORTHO05D002899 1.0e-07 60.1 61 55.7
Nn1g07558 Nelumbo nucifera HOM05D002648 ORTHO05D002899 1.0e-07 60.1 79 48.1
vmacro11610 Vaccinium macrocarpon HOM05D002648 ORTHO05D002899 1.0e-07 60.1 49 59.2
Glyma.09G061700 Glycine max HOM05D002648 ORTHO05D002899 1.3e-07 59.7 61 50.8
HanXRQChr06g0179351 Helianthus annuus HOM05D002648 ORTHO05D002899 1.3e-07 59.7 50 68.0
Lsat_1_v5_gn_8_68460 Lactuca sativa HOM05D002648 ORTHO05D002899 1.3e-07 59.7 50 68.0
RcHm_v2.0_Chr4g0398791 Rosa chinensis HOM05D002648 ORTHO05D002899 1.3e-07 59.7 87 42.5
RcHm_v2.0_Chr5g0076161 Rosa chinensis HOM05D002648 ORTHO05D002899 1.3e-07 59.7 61 54.1
CiPaw.12G140200 Carya illinoinensis HOM05D002648 ORTHO05D002899 1.7e-07 59.3 61 54.1
Migut.H01741 Erythranthe guttata HOM05D002648 ORTHO05D002899 1.7e-07 59.3 50 58.0
FvH4_4g06880 Fragaria vesca HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
FAN07G2161 Fragaria x ananassa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
FAN12G0722 Fragaria x ananassa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
FAN17G0178 Fragaria x ananassa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
FAN22G1602 Fragaria x ananassa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
GSVIVG01014731001 Vitis vinifera HOM05D002648 ORTHO05D002899 1.7e-07 59.3 50 58.0
CSS0003730 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 50.8
CSS0014501 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 50.8
Ciclev10008616m.g Citrus clementina HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 50.8
Gohir.D05G384100 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 85 43.5
Gorai.009G450900 Gossypium raimondii HOM05D002648 ORTHO05D002899 2.2e-07 58.9 85 43.5
MD13G1241400 Malus domestica HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 49.2
MD16G1244800 Malus domestica HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 49.2
Prupe.6G026800 Prunus persica HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 50.8
Ciclev10008581m.g Citrus clementina HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 52.5
FvH4_3g42500 Fragaria vesca HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 54.1
FAN11G2461 Fragaria x ananassa HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 54.1
FAN16G1801 Fragaria x ananassa HOM05D007278 ORTHO05D009280 2.9e-07 58.5 61 54.1
FAN25G1768 Fragaria x ananassa HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 54.1
Gohir.A05G001600 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 52.5
Gohir.D05G001900 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 52.5
Gorai.009G001800 Gossypium raimondii HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 52.5
Lj8A180T99 Lonicera japonica HOM05D002648 ORTHO05D002899 2.9e-07 58.5 50 54.0
QL08p003281 Quercus lobata HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 52.5
CiPaw.07G199400 Carya illinoinensis HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 54.1
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.8e-07 58.2 50 56.0
ClCG10G004350 Citrullus lanatus HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
MELO3C014109.2 Cucumis melo HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
CsaV3_3G004130 Cucumis sativus L. HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
Dinv40881 Davidia involucrata HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
Lj4g0010154 Lotus japonicus HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 49.2
THA.LOC104811762 Tarenaya hassleriana HOM05D002648 ORTHO05D002899 3.8e-07 58.2 87 42.5
Actinidia30381 Actinidia chinensis HOM05D002648 ORTHO05D002899 5.0e-07 57.8 86 41.9
Aa31LG3G13000 Aethionema arabicum HOM05D002648 ORTHO05D002899 5.0e-07 57.8 88 43.2
Eucgr.C00079 Eucalyptus grandis HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 54.1
Medtr2g038410 Medicago truncatula HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 49.2
Os06g0297600 Oryza sativa ssp. japonica HOM05D002648 ORTHO05D002899 5.0e-07 57.8 65 47.7
Rhsim06G0232200 Rhododendron simsii HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 52.5
SMO146G0277 Selaginella moellendorffii HOM05D002648 ORTHO05D002899 5.0e-07 57.8 63 52.4
Nitab4.5_0000163g0090 Nicotiana tabacum HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 52.5
Os02g0724500 Oryza sativa ssp. japonica HOM05D002648 ORTHO05D002899 6.5e-07 57.4 65 47.7
Peaxi162Scf00006g00534 Petunia axillaris HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 52.5
Phvul.003G139700 Phaseolus vulgaris HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 50.8
Psat1g142320 Pisum sativum HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 49.2
Potri.018G139500 Populus trichocarpa HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 50.8
Sed0005179 Sechium edule HOM05D007278 ORTHO05D009280 6.5e-07 57.4 61 49.2
TPR.G2542 Trifolium pratense HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 49.2
Atru.chr2.3747 Acer truncatum HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
Atru.chr2.3761 Acer truncatum HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
Cpa.g.sc12.133 Carica papaya HOM05D002648 ORTHO05D002899 8.5e-07 57.0 50 54.0
Haze_09855 Corylus avellana HOM05D002648 ORTHO05D002899 8.5e-07 57.0 50 54.0
Duzib213G0538 Durio zibethinus HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
Glyma.02G302100 Glycine max HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
Lalb_Chr07g0180751 Lupinus albus HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 54.1
Phvul.008G280700 Phaseolus vulgaris HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
PGR142G2228 Punica granatum HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 52.5
QL02p064689 Quercus lobata HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 55.7
THA.LOC104817768 Tarenaya hassleriana HOM05D002648 ORTHO05D002899 8.5e-07 57.0 87 42.5
VMungo0647G0192 Vigna mungo HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
VMungo1215G2688 Vigna mungo HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 49.2
ATR0724G084 Amborella trichopoda HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 52.5
arahy.Tifrunner.gnm1.ann1.G1W5H1 Arachis hypogaea HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
arahy.Tifrunner.gnm1.ann1.YX70Z8 Arachis hypogaea HOM05D002648 ORTHO05D002899 1.1e-06 56.6 85 43.5
Ca_06411_v3 Cicer arietinum L. HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
ECA236G3448 Erigeron canadensis HOM05D002648 ORTHO05D002899 1.1e-06 56.6 50 56.0
Thhalv10013779m.g Eutrema salsugineum HOM05D002648 ORTHO05D002899 1.1e-06 56.6 89 44.9
Medtr5g096310 Medicago truncatula HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
Nitab4.5_0000756g0050 Nicotiana tabacum HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
Solyc12g015850.1 Solanum lycopersicum HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
Sopen12g007730 Solanum pennellii HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
AL8G31510 Arabidopsis lyrata HOM05D002648 ORTHO05D002899 1.4e-06 56.2 87 40.2
Cfa013474 Carpinus fangiana HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 54.1
Duzib170G0860 Durio zibethinus HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 52.5
Lalb_Chr17g0349001 Lupinus albus HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 52.5
MD11G1035900 Malus domestica HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 52.5
Oeu017992.1 Olea europaea HOM05D002648 ORTHO05D002899 1.4e-06 56.2 50 56.0
Thecc.07G008700 Theobroma cacao HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
TPR.G1265 Trifolium pratense HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
Cc05_g15170 Coffea canephora HOM05D002648 ORTHO05D002899 1.9e-06 55.8 50 54.0
Manes.06G000200 Manihot esculenta HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 52.5
Thecc.09G190700 Theobroma cacao HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 52.5
Atru.chr7.900_Atru.chr7.901 Acer truncatum HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 50.8
Duzib150G1305 Durio zibethinus HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 52.5
Gohir.A01G093350 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 50.8
Manes.15G057700 Manihot esculenta HOM05D002648 ORTHO05D002899 2.5e-06 55.5 50 50.0
PGR083G0660 Punica granatum HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 50.8
Sp6g18830 Schrenkiella parvula HOM05D002648 ORTHO05D002899 2.5e-06 55.5 89 43.8
Ca_26141_v3 Cicer arietinum L. HOM05D001813 ORTHO05D003830 3.2e-06 55.1 61 49.2
COL.COLO4_34334 Corchorus olitorius HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 50.8
Potri.001G370800 Populus trichocarpa HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 45.9
BcaC01g06466 Brassica carinata HOM05D002648 ORTHO05D002899 4.2e-06 54.7 89 42.7
A03p12980 Brassica napus HOM05D002648 ORTHO05D002899 4.2e-06 54.7 89 42.7
C03p15150 Brassica napus HOM05D002648 ORTHO05D002899 4.2e-06 54.7 89 42.7
BraA03t10606Z Brassica rapa HOM05D002648 ORTHO05D002899 4.2e-06 54.7 89 42.7
CAN.G67.8 Capsicum annuum HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 50.8
Lalb_Chr12g0199681 Lupinus albus HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 49.2
BolC3t13956H Brassica oleracea HOM05D002648 ORTHO05D002899 5.5e-06 54.3 90 42.2
Lalb_Chr10g0107491 Lupinus albus HOM05D002648 ORTHO05D002899 5.5e-06 54.3 61 50.8
Lalb_Chr23g0276621 Lupinus albus HOM05D002648 ORTHO05D002899 5.5e-06 54.3 61 45.9
Sabra16G0243400 Salix brachista HOM05D002648 ORTHO05D002899 5.5e-06 54.3 87 42.5
SEGI_19663 Sequoiadendron giganteum HOM05D002648 ORTHO05D036899 5.5e-06 54.3 49 53.1
HPP92_015788 Vanilla planifolia HOM05D002648 ORTHO05D002899 5.5e-06 54.3 65 47.7
HPP92_015791 Vanilla planifolia HOM05D002648 ORTHO05D002899 5.5e-06 54.3 65 47.7
Carub.0008s1628 Capsella rubella HOM05D002648 ORTHO05D002899 7.2e-06 53.9 87 39.1
CARHR269320 Cardamine hirsuta HOM05D002648 ORTHO05D002899 7.2e-06 53.9 87 39.1
MELO3C029733.2 Cucumis melo HOM05D002648 ORTHO05D002899 7.2e-06 53.9 42 61.9
Thhalv10013740m.g Eutrema salsugineum HOM05D002648 ORTHO05D002899 7.2e-06 53.9 87 39.1
Sp6g17800 Schrenkiella parvula HOM05D002648 ORTHO05D002899 7.2e-06 53.9 87 39.1
THA.LOC104817713 Tarenaya hassleriana HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 47.5
AT5G55950 Arabidopsis thaliana HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
BcaB08g35960 Brassica carinata HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
BcaC04g20186 Brassica carinata HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
A10p13130 Brassica napus HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
C09p46890 Brassica napus HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
BolC9t57539H Brassica oleracea HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
BraA10t43409Z Brassica rapa HOM05D002648 ORTHO05D002899 9.4e-06 53.5 87 39.1
Duzib168G1754 Durio zibethinus HOM05D002648 ORTHO05D002899 9.4e-06 53.5 61 47.5
Sc03g0011600 Simmondsia chinensis HOM05D002648 ORTHO05D002899 9.4e-06 53.5 61 50.8


User provided reference genes

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