Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1977.2 1010 100.0
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1887.5 1011 95.7
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1672.5 1026 84.1
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1662.1 1023 82.8
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1642.5 1026 82.6
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1608.6 1022 82.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1508.8 1008 78.6
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1245.3 991 65.9
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1235.3 999 64.5
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1222.2 1017 63.8
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1208.0 1015 61.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1207.2 1016 62.5
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1201.8 1028 61.6
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1195.6 1041 61.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1194.9 1049 59.6
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1194.1 1016 62.2
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1191.0 1022 61.4
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1186.4 1017 61.4
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1071 60.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1171.8 1019 60.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1169.5 1022 60.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1167.1 1010 60.7
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1162.9 1011 60.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1158.3 1020 59.8
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1022 60.2
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1147.1 1020 60.4
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1146.0 1020 59.8
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1145.6 1022 59.5
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1143.3 1019 59.7
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1142.5 1022 59.5
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1142.5 1009 60.1
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1141.3 1020 60.2
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1140.6 1016 59.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1019 59.2
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1136.7 1024 58.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1134.0 1020 60.2
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1130.5 1025 59.8
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1122.8 1039 57.0
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1120.5 1001 59.1
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1111.3 1019 57.6
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1108.2 1024 59.0
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1106.3 1005 58.9
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1105.5 1025 57.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1098.2 1016 58.1
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1094.7 1017 57.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1092.4 1022 56.9
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1090.9 986 58.2
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1089.7 1018 57.5
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1089.7 1017 57.5
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1088.2 1021 57.6
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1085.5 1015 56.7
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1085.5 1023 57.7
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1085.1 1015 56.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1083.9 1014 57.6
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1077.8 1024 58.3
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 3.5e-311 1071.6 1015 55.7
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 8.3e-311 1070.5 1013 57.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 3.4e-309 1065.1 1015 55.9
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1019 55.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.2e-306 1056.6 1001 56.7
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 1.2e-303 1046.6 1017 55.9
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 5.4e-299 1031.2 1049 54.7
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.6e-298 1029.6 1024 54.3
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 1.0e-297 1026.9 905 60.6
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.1e-294 1016.9 1032 54.6
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 3.4e-293 1011.9 1035 52.9
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 3.8e-292 1008.4 1019 56.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.5e-288 996.5 1023 53.6
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 6.2e-287 991.1 961 55.7
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 4.0e-286 988.4 1021 53.3
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 9.9e-285 983.8 1020 52.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.6e-279 966.5 1026 52.4
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 3.1e-278 962.2 1033 52.7
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.1e-278 962.2 1026 52.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 5.3e-278 961.4 1027 52.0
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.2e-277 960.3 1023 52.0
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 7.1e-275 951.0 1033 52.2
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.1e-274 949.5 1032 53.1
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.5e-274 948.7 1044 51.3
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 6.0e-274 948.0 979 52.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 7.9e-274 947.6 1029 52.1
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.3e-273 946.0 1033 53.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.9e-272 943.0 1015 52.8
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 6.2e-271 937.9 922 55.4
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 4.6e-266 921.8 1007 51.0
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.8e-262 909.8 987 49.5
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 2.6e-261 906.0 964 52.6
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 5.9e-261 904.8 843 58.5
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.6e-258 895.2 996 49.9
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 8.2e-255 884.4 1024 49.6
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 4.2e-243 845.5 772 59.3
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 3.5e-237 825.9 773 58.3
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.2e-235 818.9 1028 47.2
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.9e-188 662.9 645 56.1
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.3e-187 659.8 644 55.7
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 9.6e-187 658.3 680 55.1
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.5e-176 624.4 595 56.1
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.2e-165 588.2 619 54.1
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 2.4e-161 573.9 548 58.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.4e-150 538.1 1070 35.5
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 3.1e-145 520.4 1083 34.4
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.4e-144 516.9 348 73.0
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.2e-138 495.7 529 54.6
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 9.7e-123 445.7 905 34.9
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 2.6e-107 394.4 385 53.2
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.7e-90 338.6 1117 28.2
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 9.5e-86 322.8 1128 28.2
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.1e-81 307.4 440 39.8
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-74 285.0 328 50.6
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.4e-68 265.8 374 40.6
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 4.2e-57 227.6 266 48.1
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 3.8e-50 204.5 221 52.0
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 2.7e-48 198.4 553 32.5
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.9e-41 175.6 228 47.8
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.1e-40 172.2 148 62.2
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.6e-37 162.5 168 56.0
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 8.7e-31 140.2 149 44.3
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.4e-28 132.1 222 35.6
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 5.5e-25 120.9 172 41.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.7e-24 118.6 430 27.0
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-22 112.8 103 57.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.2e-19 103.2 146 40.4
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.7e-19 100.5 82 59.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.2e-16 93.2 129 41.9
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 7.9e-16 90.5 248 30.2
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 8.8e-15 87.0 216 36.6
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.1e-14 86.7 50 72.0
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 7.4e-14 84.0 88 46.6
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 8.2e-13 80.5 37 97.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.8e-12 79.3 67 59.7
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.1e-12 78.6 80 53.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 5.9e-11 74.3 152 41.4
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-09 70.1 54 55.6
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-09 70.1 64 56.2
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-09 70.1 54 55.6
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.5e-09 68.9 100 49.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-07 62.4 64 53.1
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.0e-07 62.0 33 87.9
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 3.3e-06 58.5 439 23.9
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.5e-06 57.4 48 54.2


User provided reference genes

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