Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 8.0e-227 790.0 382 100.0
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.6e-203 711.4 382 89.8
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 9.6e-156 553.9 383 74.4
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 2.4e-151 539.3 384 70.8
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.9e-148 529.6 383 72.6
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.9e-148 529.6 383 72.6
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 2.0e-124 449.9 295 77.6
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 5.3e-122 441.8 397 61.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.7e-118 429.5 405 59.3
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 4.4e-116 422.2 386 57.5
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.5e-111 407.1 398 55.3
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.5e-111 405.2 399 56.9
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.8e-109 400.2 393 56.7
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 3.0e-109 399.4 400 55.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 8.8e-109 397.9 393 57.3
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 7.7e-105 384.8 513 46.4
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.0e-104 382.1 393 55.7
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 5.0e-104 382.1 397 52.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 7.2e-103 378.3 312 63.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 7.2e-103 378.3 417 54.0
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.1e-102 376.7 402 53.5
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 6.1e-102 375.2 297 64.0
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 6.8e-101 371.7 301 62.5
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 2.0e-100 370.2 417 53.0
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.4e-100 369.4 383 53.0
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 9.8e-100 367.9 402 54.2
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.2e-99 366.7 402 54.2
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.8e-99 365.5 406 52.7
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.4e-98 363.2 383 53.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.2e-96 356.7 304 62.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 8.5e-96 354.8 385 54.3
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 9.4e-95 351.3 412 50.5
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.6e-94 349.4 405 50.1
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 6.8e-93 345.1 297 62.0
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.5e-92 344.0 400 50.5
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.4e-92 342.8 394 51.5
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 5.7e-92 342.0 396 52.3
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.3e-91 340.9 391 53.2
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.2e-91 340.1 316 58.9
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 3.7e-91 339.3 395 49.9
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 8.3e-91 338.2 408 50.2
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.1e-90 337.8 387 53.0
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.1e-90 336.3 392 51.5
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.7e-89 333.2 395 50.6
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.5e-89 332.8 393 51.7
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.0e-88 331.3 391 51.9
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.7e-88 330.5 302 59.9
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.8e-88 329.3 358 53.4
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 3.8e-88 329.3 384 49.2
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.2e-86 324.3 304 55.3
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.6e-86 323.9 358 53.4
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.8e-86 323.2 361 52.9
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 3.6e-86 322.8 421 51.3
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 8.0e-86 321.6 302 56.3
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.3e-85 320.1 298 55.7
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 6.8e-85 318.5 333 53.8
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.2e-84 317.8 411 48.7
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 2.6e-84 316.6 413 47.2
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 3.4e-84 316.2 413 47.0
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 3.4e-84 316.2 442 45.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 1.7e-83 313.9 397 50.6
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.7e-83 313.9 301 57.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 3.7e-83 312.8 425 47.3
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 8.3e-83 311.6 415 48.0
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 5.4e-82 308.9 358 50.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 3.9e-80 302.8 518 40.9
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.5e-79 300.8 398 46.2
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.3e-79 299.3 313 54.3
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 4.3e-79 299.3 441 45.1
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 2.1e-78 297.0 421 47.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 6.2e-78 295.4 389 51.4
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.0e-77 292.7 407 46.4
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.5e-76 290.8 303 54.8
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 2.0e-76 290.4 300 53.7
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.4e-76 289.7 303 50.5
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.5e-73 279.6 473 40.6
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 9.5e-71 271.6 479 39.5
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 2.8e-70 270.0 404 44.6
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 8.3e-67 258.5 276 49.6
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.1e-65 253.8 392 45.7
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 2.7e-65 253.4 337 47.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.5e-65 253.1 386 44.0
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 5.1e-64 249.2 224 60.3
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.1e-63 248.1 388 44.1
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.6e-62 244.2 372 44.4
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.8e-62 243.4 297 45.8
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.7e-62 242.7 460 38.7
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.4e-61 241.1 481 38.3
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 4.4e-60 236.1 385 43.9
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.2e-57 228.0 415 42.2
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.2e-57 228.0 406 41.6
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 6.0e-57 225.7 419 42.0
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 5.1e-56 222.6 407 40.8
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 4.3e-55 219.5 402 42.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 1.6e-54 217.6 404 39.6
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 2.8e-54 216.9 477 36.5
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 6.2e-54 215.7 234 53.4
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.3e-51 208.0 406 41.6
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.6e-49 199.5 215 55.8
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.3e-48 198.0 321 46.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 6.6e-48 195.7 459 35.5
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 8.7e-48 195.3 401 40.9
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 7.3e-47 192.2 216 50.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.0e-45 186.4 296 42.2
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.0e-44 184.1 404 38.6
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 2.0e-44 184.1 387 39.8
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.4e-44 183.3 197 46.2
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 9.3e-42 175.3 378 38.6
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 3.5e-41 173.3 303 41.9
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.8e-38 163.7 235 46.8
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 6.2e-38 162.5 285 43.2
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 8.1e-38 162.2 421 35.6
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.1e-37 160.2 376 35.1
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 5.3e-37 159.5 300 36.7
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.5e-36 157.9 435 35.4
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-35 154.1 410 36.6
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 2.2e-35 154.1 410 36.6
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 4.2e-34 149.8 400 34.8
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.9e-32 143.3 306 35.9
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 9.6e-31 138.7 403 35.2
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.0e-28 131.0 284 36.6
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.5e-25 120.2 316 34.2
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 3.5e-25 120.2 305 35.4
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 3.7e-22 110.2 314 35.4
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 8.2e-22 109.0 391 33.2
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 7.9e-17 92.4 90 60.0
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.0e-16 92.0 337 31.5
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 4.1e-13 80.1 64 70.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 8.5e-11 72.4 129 39.5
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 9.4e-10 68.9 65 66.2
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.1e-09 67.8 89 49.4
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.8e-08 64.7 234 29.5
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 1.8e-08 64.7 59 59.3
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.8e-08 64.7 37 64.9
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.9e-08 63.5 147 35.4
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.3e-06 58.5 38 65.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-06 57.0 38 63.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-06 57.0 38 63.2
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-06 57.0 38 63.2
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.7e-06 57.0 38 63.2
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.7e-06 57.0 38 63.2


User provided reference genes

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