Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000946g0060 Nicotiana tabacum HOM05D007057 ORTHO05D008878 5.3e-190 668.7 754 100.0
Nitab4.5_0001857g0020 Nicotiana tabacum HOM05D007057 ORTHO05D008878 8.2e-159 565.1 755 92.1
Peaxi162Scf00976g00023 Petunia axillaris HOM05D007057 ORTHO05D008878 1.6e-133 481.1 756 84.8
Peaxi162Scf00006g00421 Petunia axillaris HOM05D007057 ORTHO05D008878 7.5e-128 462.2 756 83.5
Sopen04g025560 Solanum pennellii HOM05D007057 ORTHO05D008878 8.3e-127 458.8 750 84.5
CAN.G217.2 Capsicum annuum HOM05D007057 ORTHO05D008878 1.8e-126 457.6 756 81.7
Solyc04g056640.1 Solanum lycopersicum HOM05D007057 ORTHO05D008878 7.0e-126 455.7 750 84.4
PGSC0003DMG400010523 Solanum tuberosum HOM05D007057 ORTHO05D008878 3.2e-110 403.7 750 82.0
Cc09_g03450 Coffea canephora HOM05D007057 ORTHO05D008878 1.3e-82 312.0 756 75.8
Dinv04346 Davidia involucrata HOM05D007057 ORTHO05D008878 3.7e-74 283.9 758 71.2
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 2.5e-59 234.6 741 68.2
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 6.9e-57 226.5 700 67.3
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 7.7e-56 223.0 694 64.7
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 6.5e-55 219.9 693 63.3
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 3.2e-54 217.6 699 70.7
vmacro06001 Vaccinium macrocarpon HOM05D007057 ORTHO05D008878 1.6e-53 215.3 733 67.1
MSTRG.8219 Avicennia marina HOM05D007057 ORTHO05D008878 4.6e-53 213.8 760 65.4
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 1.4e-52 212.2 694 69.5
Rhsim03G0265600 Rhododendron simsii HOM05D007057 ORTHO05D008878 2.3e-52 211.5 695 71.7
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 6.7e-52 209.9 694 63.3
TAR362G1011 Trochodendron aralioides HOM05D007057 ORTHO05D008878 5.7e-51 206.8 748 67.9
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 1.3e-50 205.7 694 63.1
HanXRQChr01g0025821 Helianthus annuus HOM05D007057 ORTHO05D008878 2.2e-50 204.9 738 69.4
Oeu010152.2 Olea europaea HOM05D007057 ORTHO05D008878 2.2e-50 204.9 698 68.2
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 3.7e-50 204.1 693 71.1
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 4.8e-50 203.8 700 64.1
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 8.2e-50 203.0 697 68.3
Migut.L01029 Erythranthe guttata HOM05D007057 ORTHO05D008878 2.4e-49 201.4 699 70.0
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 2.0e-48 198.4 700 63.7
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 4.5e-48 197.2 694 69.6
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 1.1e-46 192.6 700 59.0
AUR62006672 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.4e-46 192.2 702 68.8
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 1.4e-46 192.2 694 69.0
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 5.5e-46 190.3 694 66.3
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 5.5e-46 190.3 698 62.3
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.2e-46 189.9 700 61.6
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.7e-45 188.0 700 60.9
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 1.0e-44 186.0 694 67.4
DCAR_001923 Daucus carota HOM05D007057 ORTHO05D008878 2.3e-44 184.9 691 63.8
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 2.0e-43 181.8 700 60.0
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 4.4e-43 180.6 225 61.8
Gorai.012G029100 Gossypium raimondii HOM05D007057 ORTHO05D008878 9.7e-43 179.5 694 70.3
Actinidia34764 Actinidia chinensis HOM05D007057 ORTHO05D008878 1.7e-42 178.7 699 66.0
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 2.2e-42 178.3 698 63.3
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.8e-42 177.9 700 58.1
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 2.8e-42 177.9 698 61.7
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 3.7e-42 177.6 700 58.1
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 8.2e-42 176.4 705 64.0
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 1.1e-41 176.0 701 65.5
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 1.4e-41 175.6 692 61.8
AUR62000330 Chenopodium quinoa HOM05D007057 ORTHO05D008878 2.4e-41 174.9 702 65.4
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 1.2e-40 172.6 709 66.0
Ah.04g158850 Amaranthus hybridus HOM05D007057 ORTHO05D008878 3.5e-40 171.0 734 64.9
EL10Ac4g09982 Beta vulgaris HOM05D007057 ORTHO05D008878 3.5e-40 171.0 693 70.3
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 1.3e-39 169.1 701 63.6
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 2.2e-39 168.3 699 55.9
Lsat_1_v5_gn_1_58361 Lactuca sativa HOM05D007057 ORTHO05D008878 5.0e-39 167.2 737 69.2
TWI75G1373 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 1.9e-38 165.2 225 64.9
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 9.4e-38 162.9 424 73.3
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 1.2e-37 162.5 225 57.3
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 1.6e-37 162.2 709 63.9
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 3.6e-37 161.0 225 60.0
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 3.6e-37 161.0 750 61.2
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 2.0e-35 155.2 739 63.5
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 5.7e-35 153.7 705 60.0
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 5.7e-35 153.7 227 54.2
ECA248G3256 Erigeron canadensis HOM05D007057 ORTHO05D008878 6.3e-34 150.2 225 65.8
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.7e-32 144.8 226 50.4
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 3.8e-31 141.0 699 65.5
Nn4g26683 Nelumbo nucifera HOM05D007057 ORTHO05D008878 5.5e-30 137.1 695 68.9
CSS0018282 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 8.0e-29 133.3 204 69.1
CSS0040898 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 8.0e-29 133.3 204 69.1
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 4.4e-27 127.5 227 48.5
Sc16g0010320 Simmondsia chinensis HOM05D007057 ORTHO05D008878 5.7e-27 127.1 225 60.4
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 7.5e-27 126.7 230 41.3
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 7.5e-27 126.7 227 42.7
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.5e-27 126.7 213 49.3
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 9.8e-27 126.3 227 47.6
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 2.2e-26 125.2 227 48.0
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 2.2e-26 125.2 708 58.9
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 2.8e-26 124.8 227 47.1
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 2.8e-26 124.8 227 47.1
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 6.3e-26 123.6 227 41.4
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 6.3e-26 123.6 228 42.1
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 8.3e-26 123.2 227 46.3
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 1.1e-25 122.9 227 42.7
Aqoxy2G03299 Aquilegia oxysepala HOM05D007057 ORTHO05D008878 1.4e-25 122.5 688 66.0
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 3.1e-25 121.3 197 43.7
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 3.1e-25 121.3 552 68.5
MBI08_g39972_MAGBIO Magnolia biondii HOM05D007057 ORTHO05D008878 3.1e-25 121.3 223 62.3
CSS0040779 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 4.5e-24 117.5 204 66.2
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 4.5e-24 117.5 227 51.1
PSO675G4505 Papaver somniferum HOM05D007057 ORTHO05D008878 3.2e-22 111.3 684 62.1
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 1.8e-20 105.5 224 60.7
Phvul.008G055400 Phaseolus vulgaris HOM05D007057 ORTHO05D008878 2.4e-17 95.1 335 45.1
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 7.0e-17 93.6 165 57.6
SalBow6G0986 Salvia bowleyana HOM05D007057 ORTHO05D008878 3.5e-16 91.3 694 59.7
Os02g0603100 Oryza sativa ssp. japonica HOM05D007057 ORTHO05D008878 1.1e-14 86.3 228 53.5
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 2.5e-14 85.1 738 54.1
Zm00001eb184050 Zea mays HOM05D007057 ORTHO05D008878 9.5e-14 83.2 230 54.8
ATR0824G263 Amborella trichopoda HOM05D007057 ORTHO05D008878 2.0e-11 75.5 174 62.1
SEGI_34516 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 2.0e-08 65.5 188 56.9
SEGI_35016 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 2.0e-08 65.5 188 56.9
Lsat_1_v5_gn_6_45200 Lactuca sativa HOM05D000071 ORTHO05D000029 3.5e-08 64.7 74 50.0
AUR62000327 Chenopodium quinoa HOM05D007057 ORTHO05D008878 5.9e-08 63.9 81 44.4
Lsat_1_v5_gn_6_42181 Lactuca sativa HOM05D000071 ORTHO05D000029 5.9e-08 63.9 75 48.0
Lsat_1_v5_gn_6_42540 Lactuca sativa HOM05D000071 ORTHO05D000029 5.9e-08 63.9 121 38.8
Lsat_1_v5_gn_6_42341 Lactuca sativa HOM05D000071 ORTHO05D000029 1.3e-07 62.8 119 39.5
RcHm_v2.0_Chr3g0480901 Rosa chinensis HOM05D000029 ORTHO05D008567 2.3e-07 62.0 89 40.4
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 5.0e-07 60.8 115 38.3
Lj2C59G4 Lonicera japonica HOM05D001042 ORTHO05D002657 5.0e-07 60.8 85 44.7
Psat1g202560 Pisum sativum HOM05D000029 ORTHO05D001395 6.6e-07 60.5 80 46.2
BcaC01g01850 Brassica carinata HOM05D000021 ORTHO05D000010 8.6e-07 60.1 87 43.7
Ciclev10010994m.g Citrus clementina HOM05D001042 ORTHO05D002657 8.6e-07 60.1 85 43.5
RcHm_v2.0_Chr3g0470501 Rosa chinensis HOM05D000071 ORTHO05D000029 8.6e-07 60.1 130 38.5
BcaB01g00947 Brassica carinata HOM05D000021 ORTHO05D000010 1.1e-06 59.7 84 44.0
BolC3t19421H Brassica oleracea HOM05D000021 ORTHO05D000010 1.1e-06 59.7 84 44.0
SGA_v2.0_scaffold160G37721 Striga asiatica HOM05D001042 ORTHO05D002657 1.1e-06 59.7 113 36.3
VMungo1309G0549 Vigna mungo HOM05D000021 ORTHO05D000010 1.1e-06 59.7 79 48.1
Carub.0005s2315 Capsella rubella HOM05D001042 ORTHO05D002657 1.5e-06 59.3 84 44.0
Gohir.D05G317800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.5e-06 59.3 79 46.8
Potri.016G051600 Populus trichocarpa HOM05D000029 ORTHO05D008567 1.5e-06 59.3 88 42.0
AT3G56370 Arabidopsis thaliana HOM05D001042 ORTHO05D002657 1.9e-06 58.9 96 40.6
FAN05G4490 Fragaria x ananassa HOM05D000029 ORTHO05D008567 1.9e-06 58.9 84 41.7
FAN09G1238 Fragaria x ananassa HOM05D000029 ORTHO05D008567 1.9e-06 58.9 84 41.7
Lsat_1_v5_gn_6_45060 Lactuca sativa HOM05D000071 ORTHO05D000029 1.9e-06 58.9 74 47.3
Manes.09G030200 Manihot esculenta HOM05D000029 ORTHO05D008567 1.9e-06 58.9 77 46.8
SEGI_29904 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 1.9e-06 58.9 79 44.3
Medtr3g092420 Medicago truncatula HOM05D000021 ORTHO05D000010 2.5e-06 58.5 93 40.9
BraA06t25118Z Brassica rapa HOM05D000021 ORTHO05D000010 4.3e-06 57.8 86 44.2
Glyma.09G272100 Glycine max HOM05D000071 ORTHO05D000029 4.3e-06 57.8 84 41.7
Glyma.09G272101 Glycine max HOM05D000071 ORTHO05D000029 4.3e-06 57.8 84 41.7
Gohir.A05G316500 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.3e-06 57.8 79 45.6
Lalb_Chr13g0295771 Lupinus albus HOM05D000021 ORTHO05D000010 4.3e-06 57.8 86 48.8
Medtr2g014560 Medicago truncatula HOM05D000029 ORTHO05D001395 4.3e-06 57.8 77 45.5
AL5G37700 Arabidopsis lyrata HOM05D001042 ORTHO05D002657 5.6e-06 57.4 84 42.9
AUR62024381 Chenopodium quinoa HOM05D000029 ORTHO05D008567 5.6e-06 57.4 90 37.8
Gorai.009G340400 Gossypium raimondii HOM05D000021 ORTHO05D000010 5.6e-06 57.4 79 45.6
Lsat_1_v5_gn_6_44800 Lactuca sativa HOM05D000071 ORTHO05D000029 5.6e-06 57.4 76 44.7
Lsat_1_v5_gn_6_48860 Lactuca sativa HOM05D000071 ORTHO05D000029 5.6e-06 57.4 76 50.0
PSO210G5503 Papaver somniferum HOM05D000029 ORTHO05D008509 5.6e-06 57.4 81 45.7
QL07p032072 Quercus lobata HOM05D001042 ORTHO05D002657 5.6e-06 57.4 85 42.4
QL07p032090 Quercus lobata HOM05D001042 ORTHO05D002657 5.6e-06 57.4 85 42.4
FAN26G2527 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.3e-06 57.0 77 42.9
Potri.016G137000 Populus trichocarpa HOM05D001042 ORTHO05D002657 7.3e-06 57.0 80 43.8
Sabra04G0153700 Salix brachista HOM05D001042 ORTHO05D002657 7.3e-06 57.0 80 43.8
VMungo1383G2525 Vigna mungo HOM05D001042 ORTHO05D002657 7.3e-06 57.0 88 42.0
BcaC06g32531 Brassica carinata HOM05D000029 ORTHO05D008567 9.5e-06 56.6 81 42.0
Gohir.A10G180100 Gossypium hirsutum HOM05D001042 ORTHO05D002657 9.5e-06 56.6 78 43.6
Gohir.D10G187000 Gossypium hirsutum HOM05D001042 ORTHO05D002657 9.5e-06 56.6 78 43.6
Gorai.011G209800 Gossypium raimondii HOM05D001042 ORTHO05D002657 9.5e-06 56.6 78 43.6
Lj1g0014304 Lotus japonicus HOM05D000029 ORTHO05D008567 9.5e-06 56.6 99 37.4
Medtr4g028090 Medicago truncatula HOM05D001042 ORTHO05D002657 9.5e-06 56.6 78 43.6
Sabra16G0055300 Salix brachista HOM05D000029 ORTHO05D008567 9.5e-06 56.6 77 45.5


User provided reference genes

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