Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.0e-126 456.8 248 100.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.2e-23 111.7 82 76.8
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.1e-22 111.3 82 75.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.8e-22 110.5 82 75.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 6.9e-22 108.6 82 73.2
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.0e-22 108.2 82 75.6
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-21 107.8 82 69.5
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 7.7e-21 105.1 82 72.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.0e-20 104.8 82 72.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.8e-20 102.8 82 67.1
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-19 101.3 82 67.1
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.9e-19 100.5 81 67.9
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.5e-19 100.1 82 70.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.2e-19 99.8 82 67.1
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.2e-19 99.8 82 67.1
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.2e-19 99.8 82 65.9
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.2e-19 99.4 82 68.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 9.4e-19 98.2 82 64.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-18 97.4 80 70.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.6e-18 97.4 82 64.6
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.1e-18 97.1 82 62.2
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.7e-18 96.7 82 65.9
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.7e-18 96.7 82 65.9
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.7e-18 96.7 82 62.2
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.6e-18 96.3 82 65.9
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.6e-18 95.9 80 70.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.6e-18 95.9 81 69.1
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.6e-18 95.9 82 64.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 7.9e-18 95.1 82 65.9
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.9e-18 95.1 82 65.9
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.9e-18 95.1 82 65.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-17 94.7 82 65.9
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.0e-17 94.7 82 65.9
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.4e-17 94.4 81 63.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 65.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 65.4
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 65.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 65.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.3e-17 93.6 82 62.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 66.7
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.3e-17 93.6 81 66.7
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.0e-17 93.2 82 65.9
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.0e-17 93.2 82 63.4
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.9e-17 92.8 82 63.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.1e-17 92.4 97 54.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.7e-17 92.0 81 64.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 8.8e-17 91.7 91 56.0
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 8.8e-17 91.7 82 65.9
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.8e-17 91.7 81 64.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 8.8e-17 91.7 82 59.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-16 91.3 81 64.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.5e-16 90.9 82 62.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.5e-16 90.9 82 63.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.0e-16 90.5 82 64.6
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.0e-16 90.5 81 64.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.0e-16 90.5 82 61.0
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.5e-16 90.1 82 57.3
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.7e-16 89.0 81 64.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 5.7e-16 89.0 81 60.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 7.4e-16 88.6 82 62.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 7.4e-16 88.6 82 59.8
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 7.4e-16 88.6 81 60.5
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.7e-16 88.2 81 61.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 9.7e-16 88.2 82 59.8
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 9.7e-16 88.2 82 59.8
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-15 87.8 81 61.7
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.3e-15 87.8 82 59.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.3e-15 87.8 92 55.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.3e-15 87.8 81 59.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.7e-15 87.4 92 56.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.2e-15 87.0 82 62.2
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.2e-15 87.0 86 57.0
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.2e-15 87.0 77 61.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 2.8e-15 86.7 81 61.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.7e-15 86.3 82 58.5
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.7e-15 86.3 82 57.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.3e-15 85.5 87 50.6
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 6.3e-15 85.5 82 58.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 6.3e-15 85.5 81 61.7
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 8.2e-15 85.1 80 58.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.1e-14 84.7 82 58.5
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.8e-14 84.0 82 58.5
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-14 84.0 81 58.0
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.8e-14 84.0 81 59.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.4e-14 83.6 92 52.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.4e-14 83.6 81 58.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.1e-14 83.2 84 57.1
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.3e-14 82.4 81 56.8
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.3e-14 82.4 81 59.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.9e-14 82.0 81 58.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 9.1e-14 81.6 81 59.3
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 9.1e-14 81.6 82 56.1
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.1e-14 81.6 81 55.6
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.2e-13 81.3 81 53.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-13 81.3 82 53.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.5e-13 80.9 81 58.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.5e-13 80.9 81 56.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-13 80.5 81 53.1
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.0e-13 80.5 82 56.1
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 3.4e-13 79.7 81 55.6
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 4.5e-13 79.3 81 58.0
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.5e-13 79.3 82 54.9
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 5.9e-13 79.0 81 58.0
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 5.9e-13 79.0 82 52.4
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.9e-13 79.0 82 54.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.0e-12 78.2 81 58.0
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-12 78.2 70 61.4
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-12 78.2 82 56.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.3e-12 77.8 82 56.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.3e-12 77.8 81 58.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-12 77.4 81 53.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-12 77.4 82 54.9
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.2e-12 77.0 81 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 2.9e-12 76.6 92 43.5
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.9e-12 76.6 81 55.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.8e-12 76.3 63 63.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.8e-12 76.3 63 63.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 3.8e-12 76.3 81 54.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.5e-12 75.1 75 58.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.5e-12 75.1 84 51.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.2e-11 73.2 70 52.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.2e-11 72.8 63 63.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.2e-11 72.8 84 50.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.5e-11 72.4 87 46.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 7.2e-11 72.0 81 58.0
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-10 70.9 60 63.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-10 70.5 82 50.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.1e-10 70.5 82 50.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.1e-10 70.5 82 50.0
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 3.6e-10 69.7 81 53.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.7e-10 69.3 58 62.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.7e-10 69.3 58 62.1
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.9e-10 68.6 82 48.8
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 7.9e-10 68.6 82 46.3
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-09 68.2 58 65.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-09 67.4 82 51.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.3e-09 67.0 82 50.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 3.0e-09 66.6 82 52.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.9e-09 66.2 58 63.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.9e-09 66.2 82 47.6
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.8e-09 65.1 91 42.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 8.8e-09 65.1 82 46.3
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 8.8e-09 65.1 91 44.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.5e-08 64.3 82 48.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.5e-08 64.3 82 45.1
Nitab4.5_0004389g0070 Nicotiana tabacum HOM05D000053 ORTHO05D000035 1.5e-08 64.3 57 54.4
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-08 63.9 57 59.6
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.6e-08 63.5 82 48.8
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.7e-08 62.4 82 43.9
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.7e-08 62.4 82 48.8
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 9.7e-08 61.6 51 60.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 9.7e-08 61.6 82 46.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 9.7e-08 61.6 82 46.3
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 9.7e-08 61.6 82 46.3
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 9.7e-08 61.6 82 46.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 9.7e-08 61.6 82 46.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-07 60.8 82 45.1
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.2e-07 60.5 82 47.6
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.2e-07 60.5 82 50.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.2e-07 60.5 82 46.3
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.2e-07 60.5 82 46.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.8e-07 60.1 80 46.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 8.2e-07 58.5 82 45.1
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.4e-06 57.8 65 50.8
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 2.4e-06 57.0 73 42.5
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.4e-06 57.0 82 46.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.3e-06 55.8 82 40.2
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.3e-06 55.8 84 42.9


User provided reference genes

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