Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000932g0010 Nicotiana tabacum HOM05D000435 ORTHO05D049332 4.6e-84 314.7 179 100.0
Nitab4.5_0010354g0010 Nicotiana tabacum HOM05D000435 ORTHO05D049332 2.0e-42 176.4 125 88.0
Nitab4.5_0000030g0450 Nicotiana tabacum HOM05D000435 ORTHO05D000430 5.0e-14 82.0 38 92.1
Peaxi162Scf00193g00724 Petunia axillaris HOM05D000435 ORTHO05D000430 6.5e-14 81.6 38 89.5
CAN.G930.10 Capsicum annuum HOM05D000435 ORTHO05D000430 1.5e-13 80.5 38 89.5
Solyc08g075430.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 1.9e-13 80.1 38 86.8
Sopen08g024060 Solanum pennellii HOM05D000435 ORTHO05D000430 1.9e-13 80.1 38 86.8
PGSC0003DMG400001967 Solanum tuberosum HOM05D000435 ORTHO05D000430 1.9e-13 80.1 38 86.8
Nitab4.5_0006410g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.2e-13 79.0 38 89.5
Nitab4.5_0013109g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 9.4e-13 77.8 38 86.8
Actinidia18168 Actinidia chinensis HOM05D000435 ORTHO05D000430 4.7e-12 75.5 38 78.9
vmacro14241 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 4.7e-12 75.5 38 78.9
Cc08_g05640 Coffea canephora HOM05D000435 ORTHO05D000430 8.0e-12 74.7 38 81.6
ECA246G3535 Erigeron canadensis HOM05D000435 ORTHO05D000430 8.0e-12 74.7 38 81.6
Lsat_1_v5_gn_3_20200 Lactuca sativa HOM05D000435 ORTHO05D000430 8.0e-12 74.7 47 68.1
Nitab4.5_0001175g0170 Nicotiana tabacum HOM05D000435 ORTHO05D000430 8.0e-12 74.7 38 86.8
Actinidia26791 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.0e-11 74.3 42 71.4
Lalb_Chr09g0324981 Lupinus albus HOM05D000435 ORTHO05D000430 1.0e-11 74.3 38 84.2
Actinidia14733 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.4e-11 73.9 38 76.3
CSS0020197 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 1.4e-11 73.9 38 76.3
Dinv41807 Davidia involucrata HOM05D000435 ORTHO05D000430 1.4e-11 73.9 38 81.6
CSS0013180 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 1.8e-11 73.6 38 76.3
Dinv37425 Davidia involucrata HOM05D000435 ORTHO05D000430 1.8e-11 73.6 38 78.9
Aa31LG2G14330 Aethionema arabicum HOM05D000435 ORTHO05D000430 2.3e-11 73.2 38 78.9
HanXRQChr17g0537291 Helianthus annuus HOM05D000435 ORTHO05D000430 2.3e-11 73.2 47 68.1
SalBow4G2663 Salvia bowleyana HOM05D000435 ORTHO05D000430 2.3e-11 73.2 38 73.7
THA.LOC104798523 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 2.3e-11 73.2 38 76.3
THA.LOC104814393 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 2.3e-11 73.2 38 76.3
AL1G45840 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 76.3
AT1G31770 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 76.3
Carub.0001s3007 Capsella rubella HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 76.3
DCAR_030905 Daucus carota HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 78.9
Thhalv10007027m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 76.3
Oeu014082.1 Olea europaea HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 76.3
GSVIVG01036869001 Vitis vinifera HOM05D000435 ORTHO05D000430 3.0e-11 72.8 38 73.7
MSTRG.11864 Avicennia marina HOM05D000435 ORTHO05D000430 4.0e-11 72.4 38 76.3
QL12p004141 Quercus lobata HOM05D000435 ORTHO05D000430 4.0e-11 72.4 38 76.3
Rhsim07G0139900 Rhododendron simsii HOM05D000435 ORTHO05D000430 4.0e-11 72.4 38 76.3
Solyc08g005580.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 4.0e-11 72.4 38 81.6
PGSC0003DMG400018479 Solanum tuberosum HOM05D000435 ORTHO05D000430 4.0e-11 72.4 38 81.6
Migut.A00529 Erythranthe guttata HOM05D000435 ORTHO05D000430 5.2e-11 72.0 38 73.7
CARHR031070 Cardamine hirsuta HOM05D000435 ORTHO05D000430 6.8e-11 71.6 38 73.7
HanXRQChr06g0173501 Helianthus annuus HOM05D000435 ORTHO05D000430 6.8e-11 71.6 47 63.8
Lj8A1G38 Lonicera japonica HOM05D000435 ORTHO05D000430 6.8e-11 71.6 38 76.3
Lj8A343G23 Lonicera japonica HOM05D000435 ORTHO05D000430 6.8e-11 71.6 38 76.3
Phvul.002G121200 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 6.8e-11 71.6 38 78.9
VMungo1215G2926 Vigna mungo HOM05D000435 ORTHO05D000430 6.8e-11 71.6 38 78.9
Sp1g27450 Schrenkiella parvula HOM05D000435 ORTHO05D000430 8.8e-11 71.2 38 73.7
Aa31LG9G15730 Aethionema arabicum HOM05D000435 ORTHO05D000430 1.2e-10 70.9 38 73.7
Glyma.16G110100 Glycine max HOM05D000435 ORTHO05D000430 1.2e-10 70.9 38 76.3
Manes.17G002900 Manihot esculenta HOM05D000435 ORTHO05D000430 1.2e-10 70.9 38 76.3
Sopen08g001610 Solanum pennellii HOM05D000435 ORTHO05D000430 1.2e-10 70.9 38 78.9
arahy.Tifrunner.gnm1.ann1.A0EMFP Arachis hypogaea HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 78.9
arahy.Tifrunner.gnm1.ann1.NJU12A Arachis hypogaea HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 78.9
BcaB07g32824 Brassica carinata HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 71.1
HanXRQChr07g0198431 Helianthus annuus HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 76.3
Lalb_Chr16g0380341 Lupinus albus HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 76.3
Manes.15G183300 Manihot esculenta HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 73.7
Potri.004G236500 Populus trichocarpa HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 73.7
Thecc.03G318800 Theobroma cacao HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 76.3
TWI79G1012 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 1.5e-10 70.5 38 71.1
MSTRG.1759 Avicennia marina HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 73.7
A05p25570 Brassica napus HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 71.1
BraA05t21439Z Brassica rapa HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 71.1
CiPaw.11G075800 Carya illinoinensis HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 73.7
Glyma.16G076900 Glycine max HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 76.3
MD08G1001300 Malus domestica HOM05D000435 ORTHO05D000430 2.0e-10 70.1 42 66.7
Nn1g09340 Nelumbo nucifera HOM05D000435 ORTHO05D000430 2.0e-10 70.1 38 68.4
BcaB03g13792 Brassica carinata HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
BcaC05g27190 Brassica carinata HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
BcaC05g27960 Brassica carinata HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
A09p34600 Brassica napus HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
C05p30900 Brassica napus HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
C05p39680 Brassica napus HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
BolC5t31820H Brassica oleracea HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
BolC5t32711H Brassica oleracea HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
BraA09t38997Z Brassica rapa HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 71.1
CDE01G0384 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 2.6e-10 69.7 45 66.7
CDE12G0735 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 2.6e-10 69.7 45 66.7
Medtr5g025470 Medicago truncatula HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 76.3
Potri.003G046800 Populus trichocarpa HOM05D000435 ORTHO05D000430 2.6e-10 69.7 38 76.3
CAN.G884.11 Capsicum annuum HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 76.3
DCAR_004522 Daucus carota HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 68.4
Gohir.A12G201900 Gossypium hirsutum HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 73.7
Gohir.D12G204600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 73.7
Gorai.008G219500 Gossypium raimondii HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 73.7
Hma1.2p1_0211F.1_g089880 Hydrangea macrophylla HOM05D000435 ORTHO05D000430 3.4e-10 69.3 38 71.1
unitig_747.g21919 Utricularia gibba HOM05D000435 ORTHO05D000430 3.4e-10 69.3 48 60.4
Duzib205G1136 Durio zibethinus HOM05D000435 ORTHO05D000430 4.4e-10 68.9 38 73.7
MD15G1000600 Malus domestica HOM05D000435 ORTHO05D000430 4.4e-10 68.9 42 64.3
Phvul.003G278800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 4.4e-10 68.9 38 76.3
TWI75G1019 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 4.4e-10 68.9 38 68.4
Glyma.01G154400 Glycine max HOM05D000435 ORTHO05D000430 5.7e-10 68.6 38 76.3
Prupe.1G353300 Prunus persica HOM05D000435 ORTHO05D000430 5.7e-10 68.6 42 66.7
MSTRG.25742 Avicennia marina HOM05D000435 ORTHO05D000430 7.5e-10 68.2 38 73.7
Glyma.11G090200 Glycine max HOM05D000435 ORTHO05D000430 7.5e-10 68.2 38 73.7
Atru.chr8.2631 Acer truncatum HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 71.1
Actinidia01253 Actinidia chinensis HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 71.1
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 71.1
Ciclev10011273m.g Citrus clementina HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 65.8
Haze_08437 Corylus avellana HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 71.1
FvH4_2g37300 Fragaria vesca HOM05D000435 ORTHO05D000430 9.8e-10 67.8 40 67.5
FAN15G3516 Fragaria x ananassa HOM05D000435 ORTHO05D000430 9.8e-10 67.8 40 67.5
FAN20G0513 Fragaria x ananassa HOM05D000435 ORTHO05D000430 9.8e-10 67.8 40 67.5
PGR031G1850 Punica granatum HOM05D000435 ORTHO05D000430 9.8e-10 67.8 38 68.4
RcHm_v2.0_Chr6g0304401 Rosa chinensis HOM05D000435 ORTHO05D000430 9.8e-10 67.8 40 67.5
CsaV3_4G007160 Cucumis sativus L. HOM05D000435 ORTHO05D000430 1.3e-09 67.4 38 71.1
ECA233G5057 Erigeron canadensis HOM05D000435 ORTHO05D000430 1.3e-09 67.4 38 68.4
Lalb_Chr05g0215061 Lupinus albus HOM05D000435 ORTHO05D000430 1.3e-09 67.4 38 71.1
Duzib068G1279 Durio zibethinus HOM05D000435 ORTHO05D000430 1.7e-09 67.0 38 68.4
Lj2g0002848 Lotus japonicus HOM05D000435 ORTHO05D000430 1.7e-09 67.0 38 68.4
CiPaw.12G054300 Carya illinoinensis HOM05D000435 ORTHO05D000430 2.2e-09 66.6 37 70.3
Ca_25035_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 2.2e-09 66.6 38 73.7
Sed0003226 Sechium edule HOM05D000435 ORTHO05D000430 2.2e-09 66.6 38 71.1
TPR.G8994 Trifolium pratense HOM05D000435 ORTHO05D000430 2.2e-09 66.6 38 71.1
COL.COLO4_11283 Corchorus olitorius HOM05D000435 ORTHO05D000430 2.8e-09 66.2 38 71.1
Migut.E01372 Erythranthe guttata HOM05D000435 ORTHO05D000430 2.8e-09 66.2 38 65.8
Lsat_1_v5_gn_6_16520 Lactuca sativa HOM05D000435 ORTHO05D000430 2.8e-09 66.2 47 61.7
Nn7g37390 Nelumbo nucifera HOM05D000435 ORTHO05D000430 2.8e-09 66.2 38 63.2
VMungo0251G0897 Vigna mungo HOM05D000435 ORTHO05D000430 2.8e-09 66.2 38 73.7
Sed0026019 Sechium edule HOM05D000435 ORTHO05D000430 3.7e-09 65.9 38 65.8
MBI16_g06574_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 4.9e-09 65.5 46 63.0
MELO3C016221.2 Cucumis melo HOM05D000435 ORTHO05D000430 6.3e-09 65.1 38 68.4
Sabra03G0019400 Salix brachista HOM05D000435 ORTHO05D000430 6.3e-09 65.1 38 71.1
PSO502G0003 Papaver somniferum HOM05D000435 ORTHO05D000430 8.3e-09 64.7 38 63.2
Cpa.g.sc90.34 Carica papaya HOM05D000435 ORTHO05D000430 1.4e-08 63.9 38 65.8
PSO675G0983 Papaver somniferum HOM05D000435 ORTHO05D000430 1.4e-08 63.9 38 65.8
vmacro00090 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 1.8e-08 63.5 38 63.2
Aqoxy3G03858 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 2.4e-08 63.2 51 52.9
Sabra01G0180700 Salix brachista HOM05D000435 ORTHO05D000430 2.4e-08 63.2 39 69.2
Oeu015541.1 Olea europaea HOM05D000435 ORTHO05D000430 3.1e-08 62.8 38 60.5
SalBow8G2249 Salvia bowleyana HOM05D000435 ORTHO05D000430 3.1e-08 62.8 38 68.4
Eucgr.D02559 Eucalyptus grandis HOM05D000435 ORTHO05D000430 4.1e-08 62.4 38 63.2
Psat2g146080 Pisum sativum HOM05D000435 ORTHO05D000430 5.4e-08 62.0 38 65.8
TWI31G0662 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 5.4e-08 62.0 38 60.5
TAR636G1064 Trochodendron aralioides HOM05D000435 ORTHO05D000430 7.0e-08 61.6 38 65.8
CDE02G3217 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 9.1e-08 61.2 45 57.8
CDE11G0595 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 9.1e-08 61.2 45 57.8
Gohir.D08G170600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.2e-07 60.8 38 65.8
Gorai.004G178100 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.2e-07 60.8 38 65.8
PGR119G0916 Punica granatum HOM05D000435 ORTHO05D000430 1.2e-07 60.8 38 60.5
Gohir.A08G149600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.6e-07 60.5 38 63.2
TAR374G1006 Trochodendron aralioides HOM05D000435 ORTHO05D000430 4.5e-07 58.9 38 60.5
TAR629G2005 Trochodendron aralioides HOM05D000435 ORTHO05D000430 4.5e-07 58.9 39 66.7
MD04G1100200 Malus domestica HOM05D013660 ORTHO05D014924 5.9e-07 58.5 54 59.3
Peaxi162Scf00369g00109 Petunia axillaris HOM05D000435 ORTHO05D000430 5.9e-07 58.5 49 55.1
TAR622G1030 Trochodendron aralioides HOM05D000435 ORTHO05D000430 5.9e-07 58.5 38 60.5
DCAR_023702 Daucus carota HOM05D000435 ORTHO05D000430 1.3e-06 57.4 38 60.5
SEGI_32156 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 1.3e-06 57.4 38 57.9
Nn4g23669 Nelumbo nucifera HOM05D000435 ORTHO05D000430 1.7e-06 57.0 38 50.0
Nitab4.5_0000221g0040 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.7e-06 57.0 49 53.1
Lj6C768T8 Lonicera japonica HOM05D000435 ORTHO05D000430 2.3e-06 56.6 38 55.3
MD13G1049400 Malus domestica HOM05D000435 ORTHO05D000430 2.3e-06 56.6 38 60.5
Nitab4.5_0003669g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 2.9e-06 56.2 49 51.0
Sopen04g002010 Solanum pennellii HOM05D000435 ORTHO05D000430 2.9e-06 56.2 49 53.1
PGSC0003DMG400007465 Solanum tuberosum HOM05D000435 ORTHO05D000430 2.9e-06 56.2 49 53.1
MD16G1050400 Malus domestica HOM05D000435 ORTHO05D000430 3.8e-06 55.8 38 57.9
arahy.Tifrunner.gnm1.ann1.RBAX1J Arachis hypogaea HOM05D000435 ORTHO05D000430 5.0e-06 55.5 38 55.3
arahy.Tifrunner.gnm1.ann1.T01IT8 Arachis hypogaea HOM05D000435 ORTHO05D000430 5.0e-06 55.5 38 55.3
Glyma.10G205600 Glycine max HOM05D000435 ORTHO05D000430 5.0e-06 55.5 38 55.3
Duzib251G0778 Durio zibethinus HOM05D000435 ORTHO05D000430 6.6e-06 55.1 38 57.9
Prupe.1G302500 Prunus persica HOM05D000435 ORTHO05D000430 6.6e-06 55.1 38 55.3
SEGI_30801 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 6.6e-06 55.1 51 47.1
CSS0024996 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 52.6
FvH4_4g28360 Fragaria vesca HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9
FAN07G2417 Fragaria x ananassa HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9
FAN12G1361 Fragaria x ananassa HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9
FAN17G0366 Fragaria x ananassa HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9
FAN22G1592 Fragaria x ananassa HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9
Solyc04g006960.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 8.6e-06 54.7 38 57.9


User provided reference genes

Program Settings