Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 4.1e-173 611.3 309 100.0
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.2e-159 566.6 309 93.2
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 8.6e-147 523.9 309 83.8
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 2.8e-137 492.3 304 81.9
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 6.6e-123 444.5 309 68.6
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 8.7e-123 444.1 308 70.1
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 7.3e-122 441.0 307 70.4
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 7.3e-122 441.0 308 69.2
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 4.8e-121 438.3 307 68.7
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 6.6e-115 417.9 307 65.8
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.4e-112 410.2 308 65.6
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 5.3e-112 408.3 307 63.8
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 1.5e-111 406.8 309 63.1
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 7.1e-109 397.9 307 62.2
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 7.1e-109 397.9 318 61.3
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 9.3e-109 397.5 303 62.0
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 2.1e-108 396.4 309 61.2
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 2.7e-108 396.0 305 62.0
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 3.5e-108 395.6 239 82.8
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 4.6e-108 395.2 307 61.9
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.0e-107 394.0 307 60.9
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 2.3e-107 392.9 307 60.9
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 3.0e-107 392.5 307 61.6
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 3.9e-107 392.1 311 61.4
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 8.7e-107 391.0 309 62.5
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 4.3e-106 388.7 307 59.9
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 2.1e-105 386.3 307 59.3
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 2.1e-105 386.3 308 61.0
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 4.8e-105 385.2 309 59.2
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 1.4e-104 383.6 307 59.3
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 5.3e-104 381.7 307 59.3
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 2.6e-103 379.4 307 58.6
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 2.6e-103 379.4 307 59.3
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 2.6e-103 379.4 309 59.5
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 3.4e-103 379.0 303 59.1
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 3.4e-103 379.0 307 58.6
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 4.5e-103 378.6 303 59.1
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 4.5e-103 378.6 303 59.1
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.8e-103 378.3 307 59.0
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.0e-102 377.5 307 59.0
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 1.1e-101 374.0 307 58.0
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 2.5e-101 372.9 307 58.6
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.5e-101 372.9 307 58.3
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.2e-101 372.5 308 58.1
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 3.5e-100 369.0 307 58.0
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 1.0e-99 367.5 307 59.0
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 1.0e-99 367.5 307 58.0
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 1.3e-99 367.1 307 57.7
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 1.3e-99 367.1 307 58.0
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.3e-99 367.1 307 57.7
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 3.0e-99 365.9 307 58.0
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.1e-98 364.0 307 58.3
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.6e-97 360.1 429 46.4
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.4e-96 357.1 307 56.0
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.8e-96 356.7 310 56.5
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.8e-96 356.7 310 56.5
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.1e-96 355.9 271 62.7
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 1.7e-94 350.1 307 55.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 8.4e-94 347.8 353 51.0
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 7.9e-92 341.3 292 56.8
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 7.9e-92 341.3 304 54.3
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 2.3e-91 339.7 308 54.2
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 6.7e-91 338.2 307 53.1
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 1.5e-90 337.0 347 51.6
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 3.3e-90 335.9 358 50.8
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 4.3e-90 335.5 251 66.5
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 1.3e-89 334.0 308 52.9
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 3.7e-89 332.4 292 56.5
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 2.0e-87 326.6 308 51.3
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.0e-86 324.3 266 61.3
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.0e-86 324.3 266 61.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 1.0e-86 324.3 301 54.2
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 1.9e-85 320.1 309 50.8
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.5e-85 319.7 308 50.6
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 3.2e-85 319.3 309 50.8
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 3.2e-85 319.3 309 50.8
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 3.2e-85 319.3 302 53.3
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 7.2e-85 318.2 310 51.0
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 4.6e-84 315.5 314 49.7
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 4.6e-84 315.5 309 50.8
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.4e-80 303.9 294 50.3
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.8e-80 303.5 309 48.2
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.4e-80 303.1 309 49.2
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 2.4e-80 303.1 309 46.9
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 4.1e-80 302.4 309 48.5
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 5.3e-80 302.0 233 60.9
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 6.9e-80 301.6 305 49.8
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 7.7e-79 298.1 296 51.4
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.4e-77 293.9 291 50.2
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 9.4e-77 291.2 237 59.1
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 3.0e-75 286.2 323 50.2
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 3.9e-75 285.8 305 48.2
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 4.8e-73 278.9 302 49.3
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 7.7e-71 271.6 241 56.4
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 2.5e-69 266.5 217 60.8
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 4.4e-66 255.8 222 55.4
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 2.8e-65 253.1 292 42.5
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 5.3e-64 248.8 231 54.5
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 8.0e-60 235.0 170 64.7
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.0e-59 234.6 243 49.4
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 3.4e-58 229.6 303 39.9
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 1.7e-49 200.7 240 44.2
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 8.6e-46 188.3 293 34.1
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 5.9e-39 165.6 114 66.7
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 5.8e-34 149.1 272 29.0
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 3.1e-27 126.7 113 54.9
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 6.8e-27 125.6 68 83.8
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 9.2e-24 115.2 69 79.7
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.6e-21 105.9 67 71.6
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.1e-20 104.0 67 70.1
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 5.8e-18 95.9 64 62.5
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 2.4e-08 63.9 64 46.9


User provided reference genes

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