Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-89 333.2 170 100.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-78 295.8 156 96.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.5e-71 273.1 170 84.7
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.6e-70 269.6 170 84.1
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 8.0e-70 267.3 171 83.6
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.5e-68 260.8 156 82.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 6.3e-67 257.7 183 76.0
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.1e-66 255.4 151 82.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.1e-66 255.0 156 79.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.4e-66 254.6 156 80.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-65 253.1 156 78.2
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.6e-65 253.1 156 79.5
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-65 252.7 156 78.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.0e-64 248.1 152 79.6
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 8.5e-64 247.3 155 80.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.1e-63 246.9 155 78.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.1e-63 246.9 150 82.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-63 246.5 167 76.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.5e-63 246.5 153 79.1
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.9e-63 246.1 152 78.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.5e-63 245.7 160 76.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.2e-63 245.4 156 79.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 4.2e-63 245.0 152 78.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 7.2e-63 244.2 150 82.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.5e-63 243.8 158 77.2
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.6e-62 243.0 150 80.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.7e-62 242.3 149 79.2
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.7e-62 242.3 143 83.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.7e-62 241.5 155 75.5
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 8.0e-62 240.7 147 81.0
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 8.0e-62 240.7 147 81.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.3e-61 239.2 147 80.3
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 3.0e-61 238.8 147 76.9
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 4.0e-61 238.4 152 77.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.0e-61 238.4 160 73.1
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.2e-60 236.9 144 79.2
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.2e-60 236.9 151 76.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.2e-60 236.9 160 74.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.5e-60 236.5 147 78.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.5e-60 236.5 166 69.9
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.5e-60 236.5 152 77.0
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.5e-60 236.5 158 74.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.4e-60 235.3 155 74.2
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.4e-60 235.3 159 74.8
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.4e-60 235.3 156 78.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.4e-60 235.0 164 71.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.4e-60 235.0 155 74.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 7.5e-60 234.2 162 72.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 7.5e-60 234.2 154 74.0
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.5e-60 234.2 147 78.9
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 9.8e-60 233.8 159 73.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.3e-59 233.4 146 77.4
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.3e-59 233.4 153 75.2
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.8e-59 232.3 151 75.5
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 4.9e-59 231.5 147 77.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 8.3e-59 230.7 157 70.7
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.4e-58 229.9 149 76.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-58 229.6 162 73.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.4e-58 229.2 178 68.0
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.1e-58 228.8 143 79.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.1e-58 228.8 168 69.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.1e-58 228.4 147 74.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 4.1e-58 228.4 143 76.2
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.4e-58 228.0 149 75.2
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 9.2e-58 227.3 143 75.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.0e-57 226.1 146 74.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.0e-57 226.1 150 72.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.9e-57 224.6 146 75.3
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 5.9e-57 224.6 143 76.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 7.7e-57 224.2 149 72.5
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-56 223.8 147 74.8
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-56 223.8 147 74.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-56 223.8 147 74.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.0e-56 223.8 147 74.8
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-56 223.8 147 74.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.0e-56 223.8 137 78.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.7e-56 223.0 146 76.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-56 223.0 157 68.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 2.3e-56 222.6 157 68.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.3e-56 222.6 147 74.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.9e-56 222.2 147 74.1
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.9e-56 222.2 146 75.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.9e-56 222.2 147 72.8
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.0e-56 221.5 154 69.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 8.6e-56 220.7 150 72.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 8.6e-56 220.7 146 73.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.1e-55 220.3 152 69.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.5e-55 219.9 151 70.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.5e-55 219.9 165 69.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.9e-55 219.5 151 71.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.5e-55 219.2 154 68.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.6e-55 218.0 159 69.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.6e-54 216.5 146 71.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-54 216.5 148 70.3
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.6e-54 216.5 146 71.2
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.8e-54 215.7 146 68.5
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.7e-54 214.9 146 71.9
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 8.0e-54 214.2 154 68.8
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 8.0e-54 214.2 154 68.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 8.0e-54 214.2 151 67.5
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.4e-53 213.4 156 67.3
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-53 213.0 146 71.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.3e-53 212.6 151 66.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.0e-53 212.2 155 67.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 5.2e-53 211.5 155 65.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 6.8e-53 211.1 147 69.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.9e-53 210.7 145 69.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 8.9e-53 210.7 154 68.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.6e-52 209.1 154 67.5
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.4e-52 208.4 147 74.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.7e-52 208.0 148 66.9
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.3e-51 206.8 145 68.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.9e-51 205.7 149 68.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.9e-51 205.7 154 65.6
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 3.7e-51 205.3 152 69.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 6.4e-51 204.5 156 65.4
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.4e-51 204.5 141 68.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.3e-51 204.1 149 67.8
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.8e-50 203.0 166 66.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.4e-50 202.6 142 69.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.4e-50 201.4 131 74.0
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.0e-50 201.1 149 65.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.0e-48 195.7 119 76.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.3e-47 191.0 147 61.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.4e-44 182.2 122 71.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 4.4e-44 181.8 142 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.9e-43 179.1 154 55.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-42 177.2 141 59.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 7.0e-42 174.5 106 82.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 4.6e-41 171.8 139 54.7
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.9e-39 166.4 106 80.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.1e-38 161.0 127 70.1
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-37 160.6 102 77.5
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.0e-36 156.4 147 57.8
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.8e-36 154.1 129 62.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.1e-34 150.6 110 67.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.9e-34 149.8 147 57.8
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.7e-33 146.0 109 67.0
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.6e-32 141.4 147 51.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.3e-31 138.7 152 51.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.4e-26 123.6 77 83.1
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-25 119.8 160 46.9
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-23 114.0 151 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.4e-20 102.4 79 60.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.4e-19 98.2 138 39.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-16 89.4 131 36.6
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 5.6e-15 85.1 152 32.2
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.6e-15 84.3 80 56.2
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 8.1e-14 81.3 153 34.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 9.9e-12 74.3 150 33.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.9e-11 72.8 145 33.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.2e-10 69.3 122 32.0
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.2e-09 67.4 94 42.6


User provided reference genes

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