Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.5e-226 789.3 417 100.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.1e-219 764.2 417 93.0
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.0e-195 685.3 416 88.0
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 7.4e-194 680.6 415 86.5
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.3e-190 669.8 415 84.8
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.9e-182 642.1 339 92.0
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.2e-159 567.0 356 75.0
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.0e-158 563.9 374 71.9
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.4e-155 553.5 403 67.7
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.4e-155 553.5 369 71.8
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.3e-155 552.7 376 70.2
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 5.2e-155 551.6 362 72.1
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.6e-154 549.3 377 70.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 5.7e-154 548.1 360 73.6
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 1.7e-153 546.6 367 72.5
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 2.4e-152 542.7 416 64.9
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.4e-152 541.6 416 64.7
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.2e-151 540.4 374 70.9
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.6e-151 538.5 411 65.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.3e-150 537.0 361 70.4
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 1.7e-150 536.6 369 70.7
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.7e-150 536.6 355 70.4
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.7e-150 536.6 416 64.4
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.3e-150 536.2 371 70.1
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 3.9e-150 535.4 371 69.5
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 3.9e-150 535.4 437 61.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 6.6e-150 534.6 419 64.4
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 8.6e-150 534.3 378 68.5
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.9e-149 533.1 383 68.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 3.3e-149 532.3 383 67.6
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 4.3e-149 531.9 364 70.9
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 7.3e-149 531.2 361 70.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 1.6e-148 530.0 429 61.8
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.1e-148 529.6 361 70.1
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.8e-148 529.3 362 69.1
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 3.6e-148 528.9 355 71.0
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.0e-148 527.7 374 68.2
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.4e-147 526.9 437 62.0
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.4e-147 526.9 437 62.0
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.4e-147 526.9 358 67.3
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 2.3e-147 526.2 374 66.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.3e-147 526.2 366 66.4
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 5.2e-147 525.0 359 71.3
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 6.8e-147 524.6 375 67.7
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.2e-146 523.9 356 68.5
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.2e-146 523.9 340 72.9
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.2e-146 523.9 363 67.5
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.5e-146 523.5 380 66.8
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.5e-146 523.5 356 69.9
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.0e-146 523.1 356 70.8
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.6e-146 522.7 410 65.4
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 2.6e-146 522.7 355 69.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 3.4e-146 522.3 374 67.6
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 7.5e-146 521.2 355 70.1
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 9.8e-146 520.8 355 69.9
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-145 519.2 427 62.3
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.9e-145 519.2 373 65.7
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 3.7e-145 518.8 400 63.2
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 3.7e-145 518.8 360 65.6
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 4.9e-145 518.5 410 64.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 8.3e-145 517.7 371 66.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.1e-144 517.3 359 68.8
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.1e-144 517.3 375 66.7
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.4e-144 516.9 359 68.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-144 516.9 374 67.1
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 2.4e-144 516.2 418 62.7
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.4e-144 515.0 359 68.5
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 2.0e-143 513.1 375 67.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.0e-143 513.1 359 69.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.0e-143 513.1 369 67.2
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 4.6e-143 511.9 358 67.3
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 7.8e-143 511.1 375 66.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.3e-142 510.4 365 68.5
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.7e-142 510.0 340 69.1
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 3.0e-142 509.2 355 67.0
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 8.6e-142 507.7 379 67.0
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.9e-141 506.5 356 69.4
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 4.3e-141 505.4 372 66.9
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 5.6e-141 505.0 372 66.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 7.3e-141 504.6 396 65.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.5e-141 504.2 378 65.6
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.8e-140 502.7 376 66.5
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.5e-138 496.9 345 69.3
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 9.8e-138 494.2 371 63.3
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.9e-137 492.7 321 72.9
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 4.9e-137 491.9 377 63.7
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.4e-137 491.5 376 64.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 4.1e-136 488.8 356 64.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.9e-134 482.3 372 62.6
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 5.2e-131 471.9 362 62.4
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 6.8e-131 471.5 362 62.2
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 8.9e-131 471.1 359 64.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.2e-130 470.7 362 63.3
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.5e-130 470.3 362 62.2
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.6e-130 469.5 362 61.0
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 4.4e-130 468.8 362 61.3
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 5.8e-130 468.4 362 61.3
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 4.9e-129 465.3 356 62.9
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 6.4e-129 464.9 362 61.0
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 6.4e-129 464.9 376 59.8
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-128 463.0 363 60.9
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 5.4e-128 461.8 352 65.1
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.6e-127 460.3 376 59.0
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 3.5e-127 459.1 376 58.8
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 3.5e-127 459.1 374 58.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.7e-126 456.8 369 61.0
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 3.0e-126 456.1 372 59.4
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 6.6e-126 454.9 417 57.1
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 3.3e-125 452.6 389 57.1
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.6e-124 449.1 374 58.0
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.4e-123 447.2 396 58.3
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.4e-120 436.4 362 60.2
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.2e-120 436.0 362 59.1
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.7e-118 430.3 359 60.4
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.7e-118 430.3 359 57.7
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.6e-118 428.3 417 60.9
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.5e-117 426.4 368 57.3
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.6e-116 423.7 421 50.8
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 4.8e-116 422.2 294 70.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.2e-114 417.5 291 69.8
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 9.3e-112 407.9 291 64.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.3e-112 407.9 344 59.0
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.8e-105 386.0 374 52.9
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 6.4e-105 385.2 247 71.7
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 6.7e-102 375.2 323 57.6
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.1e-99 366.3 360 54.4
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.6e-98 363.2 296 59.8
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 6.5e-97 358.6 297 60.6
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 9.0e-91 338.2 295 56.9
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.6e-90 336.7 367 47.1
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.1e-88 331.3 304 54.6
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 4.8e-84 315.8 386 45.1
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 4.1e-83 312.8 378 44.4
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.5e-74 284.3 181 72.4
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.1e-72 278.1 357 46.2
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.3e-60 238.0 324 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 3.8e-57 226.5 306 42.2
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.9e-56 224.2 228 51.8
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.2e-56 223.4 176 67.6
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.1e-51 208.4 127 73.2
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.0e-50 204.1 362 37.6
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.0e-50 204.1 362 37.6
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.3e-49 201.4 378 35.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-45 188.0 230 44.3
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 2.8e-44 183.7 367 35.7
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.4e-35 152.9 121 58.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 6.6e-25 119.4 377 26.5
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 2.5e-24 117.5 385 24.4
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.4e-21 107.1 105 50.5
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.9e-20 104.0 271 29.9
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 4.1e-19 100.1 67 70.1
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 7.8e-18 95.9 122 45.1
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-17 94.7 85 60.0
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-17 94.7 85 60.0
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.3e-16 90.5 53 77.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.8e-14 84.7 75 57.3
Peaxi162Scf00078g00420 Petunia axillaris HOM05D004497 ORTHO05D005539 3.0e-09 67.4 76 64.5
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 5.6e-08 63.2 41 70.7
Nitab4.5_0000264g0030 Nicotiana tabacum HOM05D004497 ORTHO05D284815 5.6e-08 63.2 62 56.5


User provided reference genes

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